View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12219_high_1 (Length: 481)
Name: NF12219_high_1
Description: NF12219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12219_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 28255927 - 28255567
Alignment:
| Q |
20 |
tgcagttggcaccatttgccacttcttgttcttgccagctatgtgttccaacattttattgcggaaattaatactactagtactatataaagattgaaag |
119 |
Q |
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| T |
28255927 |
tgcagttggcaccatttgccacttcttgttcttgccagctatgtgttccaacattttattgcggaaattaatactactagtactatataaagattgaaag |
28255828 |
T |
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| Q |
120 |
gcatcgatcatattgcagaaataactatggagttatatgtcttttttctaagtctaaaggttaggaacttattgtctaaatatttatat-----agaatg |
214 |
Q |
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| T |
28255827 |
gcatcgatcatattgcagaaataactatggagttatatgtcttttttctaagtctaaaggttaggaacttattgtctaaatatttatatgaataagaatg |
28255728 |
T |
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| Q |
215 |
ttatacataaaactatgatatttggtgactattgtaaaccacatcatgagagctctacacttccttggagtctcattaaacaattcaccgaaaatgtccc |
314 |
Q |
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| T |
28255727 |
ttatacataaaactatgatatttggtgactattttaaaccacatcatgagagctctacacttccttggagtctcattaaacaattcaccgaaaatgtccc |
28255628 |
T |
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| Q |
315 |
caagtttgttgaactcaaatataacactagttcaaactacccctatatgttccaagtgttg |
375 |
Q |
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| T |
28255627 |
caagtttgttgaactcaaatataacactagttcaaactacccctttatgttccaagtgttg |
28255567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 415 - 464
Target Start/End: Complemental strand, 28255526 - 28255477
Alignment:
| Q |
415 |
caaagtatttaaggggttgatcgcttcaaacaaatgttttccaatagcac |
464 |
Q |
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| T |
28255526 |
caaagtatttaaggggttgatcccttcaaacaaatgtttttcaatagcac |
28255477 |
T |
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