View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12219_high_2 (Length: 216)
Name: NF12219_high_2
Description: NF12219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12219_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 38299300 - 38299462
Alignment:
| Q |
38 |
catgttttgaagaaccctcatttccttgctgaagtctttatggttttgctcccagctcgtttcaaaccacaaagcaggtctctttccatcaaaaccctag |
137 |
Q |
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| T |
38299300 |
catgttttgaagaaccctcatttcctt-ctgaagtctttatggttttgctcccagctcgtttcaaaccacaaagcaggtctctttccatcaaaaccctag |
38299398 |
T |
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| Q |
138 |
ccagattctcatttacatcaccctaaaccattataacaagaaagcgttatgttctacatctgtg |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38299399 |
ccagattctcatttacatcaccctaaaccattataacaagaaagcgttatgttctacatctgtg |
38299462 |
T |
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