View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12219_high_4 (Length: 210)

Name: NF12219_high_4
Description: NF12219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12219_high_4
NF12219_high_4
[»] chr6 (20 HSPs)
chr6 (1-198)||(14686195-14686392)
chr6 (26-198)||(25351004-25351176)
chr6 (29-166)||(26514509-26514646)
chr6 (1-201)||(14843321-14843521)
chr6 (26-166)||(19350725-19350865)
chr6 (50-183)||(26206138-26206271)
chr6 (26-161)||(13938499-13938634)
chr6 (26-183)||(2554386-2554543)
chr6 (26-177)||(33640698-33640849)
chr6 (26-96)||(502821-502891)
chr6 (26-123)||(24766676-24766773)
chr6 (26-180)||(10362928-10363081)
chr6 (26-96)||(13086324-13086394)
chr6 (26-114)||(17576988-17577076)
chr6 (49-148)||(21629359-21629458)
chr6 (40-183)||(32186478-32186621)
chr6 (26-148)||(17605571-17605693)
chr6 (51-96)||(13563219-13563264)
chr6 (49-117)||(649341-649409)
chr6 (49-117)||(11060130-11060198)
[»] chr3 (33 HSPs)
chr3 (26-197)||(40512912-40513083)
chr3 (26-201)||(34830173-34830349)
chr3 (1-198)||(53942002-53942199)
chr3 (27-198)||(31675713-31675884)
chr3 (26-198)||(31920539-31920711)
chr3 (26-183)||(2365059-2365216)
chr3 (26-183)||(19876024-19876181)
chr3 (26-184)||(962364-962522)
chr3 (26-183)||(34332017-34332174)
chr3 (35-162)||(8130763-8130890)
chr3 (26-184)||(16179721-16179879)
chr3 (26-180)||(48569228-48569382)
chr3 (26-183)||(19919431-19919588)
chr3 (53-96)||(48930534-48930577)
chr3 (26-184)||(17077498-17077656)
chr3 (29-183)||(17270944-17271098)
chr3 (53-117)||(16672289-16672353)
chr3 (26-98)||(52907329-52907401)
chr3 (26-92)||(36731674-36731740)
chr3 (53-98)||(6825620-6825665)
chr3 (26-183)||(43120876-43121033)
chr3 (53-98)||(52250412-52250457)
chr3 (29-198)||(55367393-55367562)
chr3 (35-183)||(14309369-14309517)
chr3 (30-117)||(23819350-23819437)
chr3 (26-117)||(50545024-50545115)
chr3 (38-96)||(10868437-10868495)
chr3 (26-96)||(14863745-14863815)
chr3 (26-96)||(21739777-21739847)
chr3 (37-94)||(15481049-15481106)
chr3 (66-135)||(22733721-22733790)
chr3 (26-94)||(22734014-22734082)
chr3 (37-117)||(46907938-46908018)
[»] chr1 (26 HSPs)
chr1 (27-201)||(13867024-13867198)
chr1 (26-201)||(1247770-1247945)
chr1 (26-201)||(5809362-5809537)
chr1 (1-201)||(3544285-3544485)
chr1 (1-135)||(20987911-20988045)
chr1 (26-183)||(6051384-6051541)
chr1 (35-183)||(28358681-28358829)
chr1 (29-201)||(19014166-19014339)
chr1 (26-180)||(25504197-25504351)
chr1 (50-183)||(5497891-5498024)
chr1 (26-123)||(35541815-35541912)
chr1 (53-132)||(45271049-45271128)
chr1 (29-123)||(40562820-40562914)
chr1 (32-125)||(47622337-47622430)
chr1 (26-96)||(20796441-20796511)
chr1 (26-184)||(49264166-49264324)
chr1 (50-183)||(32352514-32352647)
chr1 (26-135)||(39431067-39431176)
chr1 (50-183)||(48072628-48072761)
chr1 (66-183)||(51052702-51052819)
chr1 (56-129)||(42475154-42475227)
chr1 (49-117)||(7395988-7396056)
chr1 (49-117)||(17708862-17708930)
chr1 (26-98)||(19042904-19042976)
chr1 (49-117)||(26721437-26721505)
chr1 (56-128)||(36099745-36099817)
[»] chr2 (19 HSPs)
chr2 (27-164)||(11197134-11197271)
chr2 (35-183)||(2207024-2207172)
chr2 (35-162)||(13416476-13416603)
chr2 (49-183)||(33583630-33583764)
chr2 (50-183)||(13551387-13551520)
chr2 (53-123)||(26147023-26147093)
chr2 (27-96)||(15018459-15018528)
chr2 (49-180)||(6724837-6724968)
chr2 (53-98)||(43311067-43311112)
chr2 (49-117)||(44028481-44028549)
chr2 (49-112)||(20004749-20004812)
chr2 (26-96)||(12646331-12646401)
chr2 (26-95)||(22724729-22724798)
chr2 (30-99)||(34357593-34357662)
chr2 (35-90)||(43722321-43722376)
chr2 (37-95)||(8065551-8065609)
chr2 (66-120)||(10289331-10289385)
chr2 (53-123)||(10689346-10689416)
chr2 (37-125)||(35488630-35488718)
[»] chr8 (25 HSPs)
chr8 (26-183)||(6245865-6246022)
chr8 (26-198)||(25193869-25194041)
chr8 (26-162)||(9923382-9923518)
chr8 (26-183)||(7925167-7925324)
chr8 (29-183)||(29721113-29721267)
chr8 (26-183)||(32267335-32267492)
chr8 (26-180)||(4987270-4987424)
chr8 (26-123)||(15539838-15539935)
chr8 (26-123)||(8300584-8300681)
chr8 (26-183)||(41664570-41664727)
chr8 (53-117)||(36493189-36493253)
chr8 (26-96)||(36157935-36158005)
chr8 (53-129)||(12332656-12332732)
chr8 (49-117)||(26774515-26774583)
chr8 (26-96)||(13878776-13878846)
chr8 (26-96)||(24794501-24794571)
chr8 (37-96)||(23942879-23942938)
chr8 (1-88)||(36025277-36025364)
chr8 (26-96)||(11393620-11393690)
chr8 (66-135)||(5585762-5585831)
chr8 (39-96)||(12341361-12341418)
chr8 (26-123)||(17700261-17700358)
chr8 (26-94)||(5585470-5585538)
chr8 (26-98)||(7453133-7453205)
chr8 (49-117)||(17659645-17659713)
[»] chr4 (26 HSPs)
chr4 (27-133)||(43516000-43516106)
chr4 (30-183)||(9691208-9691361)
chr4 (26-183)||(19756048-19756205)
chr4 (26-183)||(19783601-19783758)
chr4 (26-183)||(23641793-23641950)
chr4 (26-183)||(23647451-23647608)
chr4 (37-184)||(19733189-19733336)
chr4 (26-176)||(29553010-29553160)
chr4 (26-183)||(1827742-1827899)
chr4 (26-183)||(47419585-47419742)
chr4 (35-183)||(2072330-2072478)
chr4 (35-126)||(38296495-38296586)
chr4 (49-183)||(19162371-19162505)
chr4 (26-95)||(19115217-19115286)
chr4 (71-180)||(40688907-40689016)
chr4 (26-156)||(19648476-19648606)
chr4 (26-95)||(8935855-8935924)
chr4 (26-96)||(42952820-42952890)
chr4 (26-96)||(48312875-48312945)
chr4 (26-96)||(54482449-54482519)
chr4 (50-183)||(23872679-23872812)
chr4 (37-117)||(34976733-34976813)
chr4 (49-183)||(2365810-2365943)
chr4 (26-80)||(15741001-15741055)
chr4 (26-96)||(55724996-55725066)
chr4 (50-183)||(55299426-55299559)
[»] scaffold0034 (1 HSPs)
scaffold0034 (26-183)||(105045-105202)
[»] chr7 (19 HSPs)
chr7 (26-183)||(4937330-4937487)
chr7 (26-162)||(17721416-17721552)
chr7 (26-166)||(27218341-27218481)
chr7 (26-183)||(29968755-29968912)
chr7 (49-183)||(45164749-45164883)
chr7 (26-162)||(11276471-11276607)
chr7 (26-177)||(45993357-45993508)
chr7 (66-123)||(6335654-6335711)
chr7 (37-98)||(23054257-23054318)
chr7 (53-132)||(41805012-41805091)
chr7 (26-96)||(19735299-19735369)
chr7 (53-123)||(25018564-25018634)
chr7 (26-95)||(18671952-18672021)
chr7 (29-192)||(33820752-33820915)
chr7 (50-183)||(13440863-13440996)
chr7 (27-80)||(34104259-34104312)
chr7 (27-95)||(19544694-19544762)
chr7 (26-94)||(41340330-41340398)
chr7 (26-98)||(45871544-45871616)
[»] chr5 (30 HSPs)
chr5 (26-183)||(42514501-42514658)
chr5 (26-198)||(380682-380854)
chr5 (26-162)||(28534899-28535035)
chr5 (26-181)||(23239164-23239319)
chr5 (66-180)||(36256596-36256710)
chr5 (53-135)||(21084689-21084771)
chr5 (26-184)||(33170439-33170597)
chr5 (26-183)||(22094451-22094608)
chr5 (26-183)||(30731516-30731673)
chr5 (26-123)||(35983053-35983150)
chr5 (53-117)||(41590897-41590961)
chr5 (26-96)||(8299471-8299541)
chr5 (26-96)||(27796265-27796335)
chr5 (26-96)||(35121977-35122047)
chr5 (53-98)||(4297596-4297641)
chr5 (26-94)||(19506779-19506847)
chr5 (26-94)||(22437999-22438067)
chr5 (28-96)||(29572159-29572227)
chr5 (28-96)||(29573536-29573604)
chr5 (28-96)||(29574913-29574981)
chr5 (28-96)||(29576290-29576358)
chr5 (28-96)||(29577667-29577735)
chr5 (28-96)||(29579044-29579112)
chr5 (26-96)||(25856728-25856798)
chr5 (49-95)||(26261608-26261654)
chr5 (26-96)||(30509312-30509382)
chr5 (26-96)||(30549655-30549725)
chr5 (53-117)||(6050048-6050112)
chr5 (26-94)||(10780982-10781050)
chr5 (29-77)||(10793231-10793279)
[»] scaffold0048 (1 HSPs)
scaffold0048 (35-183)||(63502-63650)
[»] scaffold0472 (1 HSPs)
scaffold0472 (26-160)||(4033-4167)
[»] scaffold0016 (1 HSPs)
scaffold0016 (53-123)||(28582-28652)
[»] scaffold0189 (1 HSPs)
scaffold0189 (27-96)||(6873-6942)
[»] scaffold0043 (1 HSPs)
scaffold0043 (1-64)||(33930-33993)
[»] scaffold1350 (1 HSPs)
scaffold1350 (26-96)||(325-395)
[»] scaffold0179 (1 HSPs)
scaffold0179 (51-117)||(8338-8404)
[»] scaffold0112 (1 HSPs)
scaffold0112 (37-98)||(14948-15009)
[»] scaffold0026 (1 HSPs)
scaffold0026 (37-94)||(67872-67929)
[»] scaffold0061 (1 HSPs)
scaffold0061 (67-123)||(55487-55543)
[»] scaffold0017 (1 HSPs)
scaffold0017 (67-123)||(143090-143146)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 7e-82; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 14686392 - 14686195
Alignment:
Q  1 atcctcactccctccccnnnnnnnnttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaac 100  Q
    |||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||     
T  14686392 atcctcactccctccccaaaaaaaattattaaacatagattcaatgatagagattatacctgacggagccttgaagaaggaaagagcatagacaggtaat 14686293  T
Q  101 gcggtcaggacagacttcagaaggaccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacagg 198  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14686292 gcggacaggacagaattcagaaggaccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacagg 14686195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 25351004 - 25351176
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||| | || ||||| |||| |||| | |||||    
T  25351004 ttattaaaaatagattcaatgatagagattatacctgacggagctttgaagaaggaaagagcatagacaggaagcgaggtcaagacaaactttaaaagga 25351103  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacagg 198  Q
    |||||||||| ||||| || || || ||||| ||||||||| ||| ||| || |||||||| | |||||||||    
T  25351104 ccaaccgaccaccataggatagaaagcgactctgccaccccgacaatctggacttaattgtatgcaacacagg 25351176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 29 - 166
Target Start/End: Original strand, 26514509 - 26514646
Alignment:
Q  29 ttaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggacca 128  Q
    ||||| ||||||||||||||||||| ||||||||||||||| |||||||| | ||||||||||||||| | || ||||| ||| ||||||| ||||||||    
T  26514509 ttaaaaatagattcaatgatagagagtatacctgacagagctttgaagaaagaaagagcatagacaggaagcgaggtcaagaccgacttcaaaaggacca 26514608  T
Q  129 accgacctccataagaaaggaaacgactttgccacccc 166  Q
    | ||||| ||| |||| || || ||||| |||||||||    
T  26514609 aacgaccaccaaaagatagaaagcgactatgccacccc 26514646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 14843521 - 14843321
Alignment:
Q  1 atcctcactccctccccnnnnnnnnttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaac 100  Q
    |||||||||||||||||        |||||||| ||||||||||||| |||||||||||||||| |||| |||||||||| ||| ||||||||||| ||     
T  14843521 atcctcactccctccccaaaaaaatttattaaaaatagattcaatgacagagattatacctgacggagctttgaagaaggaaagggcatagacaggcaat 14843422  T
Q  101 gcggtcaggacagacttcagaaggaccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacaggtt 200  Q
    | ||||| ||||| ||| ||||| | ||||||||| ||| |||| ||  | | ||||||||||||| | | |||||| || ||  | |||||||||||||    
T  14843421 gaggtcaagacagtcttgagaagaatcaaccgacccccaaaagagagatagctactttgccaccccgataatctagactttatattcttcaacacaggtt 14843322  T
Q  201 c 201  Q
    |    
T  14843321 c 14843321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 166
Target Start/End: Original strand, 19350725 - 19350865
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||| ||| |||||||||||| |||| |||||||||| |||  |||||||||| | ||   |||| |||||||| ||||| |    
T  19350725 ttattaaacaaagattcaatgagagaaattatacctgacggagctttgaagaaggaaagtacatagacaggaagcgaactcagtacagacttaagaagaa 19350824  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccacccc 166  Q
    |||| ||||| ||  |||| || ||||||||||||||||||    
T  19350825 ccaaacgacccccgaaagatagaaaacgactttgccacccc 19350865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 50 - 183
Target Start/End: Original strand, 26206138 - 26206271
Alignment:
Q  50 gagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagga 149  Q
    ||||||||||||||  |||| |||||||||| ||| ||||||||||| || | |||||||||||| || ||||| ||||| ||||| ||| |||| || |    
T  26206138 gagattatacctgatggagctttgaagaaggaaagtgcatagacaggcaaagaggtcaggacagatttgagaagaaccaagcgaccaccaaaagatagaa 26206237  T
Q  150 aacgactttgccaccccaacagtctagatttaat 183  Q
    | ||||| | ||| ||| ||||||||||||||||    
T  26206238 accgactattccaacccgacagtctagatttaat 26206271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 13938499 - 13938634
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    ||||| |||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||||||||||| ||| |  || ||||||||||| || |||||||    
T  13938499 ttatttaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagagcatagataggaagtgcagtcaggacagatttgagaagga 13938598  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgcc 161  Q
     ||| || || ||| |||||||||| ||||| ||||    
T  13938599 tcaatcggccaccaaaagaaaggaaccgactatgcc 13938634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 2554386 - 2554543
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||| ||| |||| ||||| |||| ||| |||||||||||||  || ||||||||  |||| || || |    
T  2554386 ttattaaacaaagattcaatggaagagattatacccgacggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacgaactttagtagaa 2554485  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||||||||| |||||||| || ||  ||| ||||||||||||    
T  2554486 tcaaacgaccaccgaaagaaaggaaccgactttgtcaaccagacaatctagatttaat 2554543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 33640698 - 33640849
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| | |||||||| | |||| |||||||| |||||||| |||||||| | ||||||||||||||| |  | |||||  ||||| || ||||| |    
T  33640698 ttattaaataaagattcaagggtagaaattatacccgacagagctttgaagaaagaaagagcatagacaggcagagaggtcaacacagatttgagaagaa 33640797  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctaga 177  Q
    |||| || || ||| |||| ||||||||||| | ||| ||  ||||||||||    
T  33640798 ccaaacggccaccaaaagagaggaaacgactattccaacctgacagtctaga 33640849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 502891 - 502821
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    |||||||| | |||||||| | ||||||||||||||||| |||| |||||||| | |||||||||||||||    
T  502891 ttattaaataaagattcaagggtagagattatacctgacggagctttgaagaaagaaagagcatagacagg 502821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 24766773 - 24766676
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    ||||| |||| ||||| ||||  |||||||||||||||| |||| ||||| |||| ||| |||||||||||||  || |||||||| ||||| |||||    
T  24766773 ttatttaacaaagatttaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacggactttagaag 24766676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 180
Target Start/End: Original strand, 10362928 - 10363081
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| ||||| ||||||  ||| ||||||  |||| || |||||||||||| |||||||||||||||||  | ||||| ||||||||| ||||| |    
T  10362928 ttattaaaaatagaatcaatggaagaaattatat-tgacggaaccttgaagaaggaaagagcatagacaggtagagaggtcaagacagacttgagaagaa 10363026  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagattt 180  Q
    | || ||||| ||| | || || || |||||||   ||||  |||||||||||||    
T  10363027 ctaaacgaccaccaaacgacagaaaccgacttttgaaccctgacagtctagattt 10363081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 13086324 - 13086394
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||| |||||||||||||||  |||| || ||||||| ||||||||| |||||    
T  13086324 ttatttaacaaagattcaatgaaagagattatacctgatggagctttaaagaaggaaagagcataaacagg 13086394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 114
Target Start/End: Complemental strand, 17577076 - 17576988
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacaga 114  Q
    |||||||||| |||||||||   |||||||||||||||| |||| ||||| |||| ||| | ||||||||| | ||| |||| ||||||    
T  17577076 ttattaaacaaagattcaatagaagagattatacctgacggagctttgaaaaaggaaagtgaatagacaggaagcgcagtcaagacaga 17576988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 21629458 - 21629359
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagg 148  Q
    |||||||||||||||| |||| ||||| |||| ||| ||||||||||| | ||| |||| |||||| || ||||| | ||| ||||| ||| | ||||||    
T  21629458 agagattatacctgacggagctttgaaaaaggaaagtgcatagacaggaagcgcagtcaagacagatttgagaagtatcaagcgaccaccaaaggaaagg 21629359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 183
Target Start/End: Original strand, 32186478 - 32186621
Alignment:
Q  40 ttcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctcca 139  Q
    |||||||  |||||||||| ||| | |||| |||||||| | |||||  |||||||| | || ||||||||||||||| ||||| | ||| || || |||    
T  32186478 ttcaatggaagagattatatctgtcggagctttgaagaaagaaagagtgtagacaggaagcgaggtcaggacagacttaagaagaatcaagcggccccca 32186577  T
Q  140 taagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     |||| || || ||||| ||||||    ||||||||||||||||    
T  32186578 aaagatagaaagcgactctgccactttgacagtctagatttaat 32186621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 148
Target Start/End: Complemental strand, 17605693 - 17605571
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    ||||| |||| |||||||||   |||||||||||||||  |||| ||||| |||| ||| ||||||||||| | ||| |||| |||||| || ||||| |    
T  17605693 ttatttaacaaagattcaatagaagagattatacctgatggagctttgaaaaaggaaagcgcatagacaggaagcgcagtcaagacagatttgagaagta 17605594  T
Q  126 ccaaccgacctccataagaaagg 148  Q
     ||| ||||| ||| | ||||||    
T  17605593 tcaaacgaccaccaaaggaaagg 17605571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 13563264 - 13563219
Alignment:
Q  51 agattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    |||||||||||||| |||| ||||| |||| |||||||||||||||    
T  13563264 agattatacctgacggagctttgaaaaaggaaagagcatagacagg 13563219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 649409 - 649341
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    |||||||||||||||  |||| |||||||||| ||| ||||||||||| |  | |||||| ||||||||    
T  649409 agagattatacctgatggagctttgaagaaggaaagcgcatagacaggcagagaggtcagaacagactt 649341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 11060198 - 11060130
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    |||||||||||||||  || | |||||||||| ||| ||||||||||| ||   |||||||||||||||    
T  11060198 agagattatacctgatggaactttgaagaaggaaagcgcatagacaggcaaaaaggtcaggacagactt 11060130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 128; Significance: 2e-66; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 40513083 - 40512912
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| || |||||||||||||| |||||||    
T  40513083 ttattaaaaagagattcaatgatagagattatacctgacggagccttgaagaaggaaagagcatagacaggtaatgcagtcaggacagacttaagaagga 40512984  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacag 197  Q
    |||||||||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40512983 ccaaccgacctccaaaagagagaaaacgactttgccaccccaacagtctagatttaattgtttgcaacacag 40512912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 34830173 - 34830349
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| ||||||||||||  |||||||||||||||| |||||  |||||||| ||||||||||||||||||| |||||||||||||||| |||||||    
T  34830173 ttattaaaaatagattcaatggcagagattatacctgacggagccaggaagaaggaaagagcatagacaggtaacacggtcaggacagacttaagaagga 34830272  T
Q  126 ccaaccga-cctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacaggttc 201  Q
    |||||||| || |||||||| || |||||||||||||||||| ||| |||||||||||| || |||| ||| |||||    
T  34830273 ccaaccgaccccccataagagagaaaacgactttgccaccccgacaatctagatttaatggtattcatcactggttc 34830349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 53942002 - 53942199
Alignment:
Q  1 atcctcactccctccccnnnnnnnnttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaac 100  Q
    |||||||||||||||||        |||||||| |||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| | | |    
T  53942002 atcctcactccctccccaaaattttttattaaaaatagattcaatgatagagattatacctgacggagctttgaagaaggaaagagcatagacaagaagc 53942101  T
Q  101 gcggtcaggacagacttcagaaggaccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacagg 198  Q
    | ||||| ||||||||| | ||||||||||||||| ||||| || || || ||||| ||||||||| ||| ||| || |||||||| | |||||||||    
T  53942102 gaggtcaagacagactttaaaaggaccaaccgaccaccataggatagaaagcgactctgccaccccgacaatctggacttaattgtatgcaacacagg 53942199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 31675713 - 31675884
Alignment:
Q  27 tattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggac 126  Q
    ||||||| ||||||||||||| |||||||||||||||| |||| |||||||||| ||| ||||||||||| || | ||||||||||||||| || || ||    
T  31675713 tattaaaaatagattcaatgacagagattatacctgacggagctttgaagaaggaaagggcatagacaggcaatgaggtcaggacagacttgagtagaac 31675812  T
Q  127 caaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacagg 198  Q
    ||||||||| ||| |||| || || ||| ||||||||||| | | |||||| ||||| || |||||||||||    
T  31675813 caaccgacccccaaaagagagaaagcgattttgccaccccgataatctagacttaatggtcttcaacacagg 31675884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 31920711 - 31920539
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| ||||||||||||| ||||||||||| ||||  ||| |||||||||| ||| ||||||||||| || | ||||||||||||||| || || |    
T  31920711 ttattaaaaatagattcaatgacagagattatacttgacgaagctttgaagaaggaaagggcatagacaggcaatgaggtcaggacagacttgagtagaa 31920612  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacagg 198  Q
    |||||||||| ||| |||| || || ||| ||||||||||| | | |||||| ||||| || |||||||||||    
T  31920611 ccaaccgacccccaaaagagagaaagcgattttgccaccccgataatctagacttaatggtcttcaacacagg 31920539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 2365059 - 2365216
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||| | |||| |||||||||| ||| |||||||||||||  || |||||||||||||| ||||| |    
T  2365059 ttattaaacaaagattcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaa 2365158  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||| ||||| ||||||||||| ||  ||| ||||||||||||    
T  2365159 tcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaat 2365216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 19876024 - 19876181
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||| ||| |||||||||||| |||  |||||||||| ||| ||||||||||| | ||  |||||||||||||| ||||| |    
T  19876024 ttattaaacaaagattcaatgagagaaattatacctgacggagatttgaagaaggaaagtgcatagacaggaagcgaagtcaggacagacttaagaagaa 19876123  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
    |||| ||||| ||  |||| || |||| ||||||||||||| ||| ||||| ||||||    
T  19876124 ccaagcgacccccgaaagatagaaaacaactttgccaccccgacaatctagttttaat 19876181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 962522 - 962364
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    ||||| |||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||||||||||||||| |  || ||||||||||| || |||||||    
T  962522 ttatttaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagagcatagacaggaagtgcagtcaggacagatttgagaagga 962423  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaatt 184  Q
     |||||| || ||| |||||||||| ||||| ||||| ||  ||| ||||| |||||||    
T  962422 tcaaccggccaccaaaagaaaggaaccgactatgccaaccagacaatctagctttaatt 962364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 34332174 - 34332017
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||||| |||| || || |||| ||| |||||||||||||  || |||||||||||||| || || |    
T  34332174 ttattaaacaaagattcaatggaagagattatacctgacggagctttaaaaaaggaaagtgcatagacaggtagagcagtcaggacagactttagtagaa 34332075  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||||||||| ||||||||||| ||  ||| ||||||||||||    
T  34332074 tcaaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagatttaat 34332017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 8130763 - 8130890
Alignment:
Q  35 atagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgac 134  Q
    |||||||| |||  ||||||| ||||||   ||||||||||||||| |||||||||||| |||  |||||||| ||||||||| ||||| | ||| ||||    
T  8130763 atagattctatggaagagattctacctgctggagccttgaagaaggaaagagcatagaccggttgcgcggtcaagacagactttagaagaatcaagcgac 8130862  T
Q  135 ctccataagaaaggaaacgactttgcca 162  Q
    ||||| | ||||| || |||||||||||    
T  8130863 ctccaaatgaaagaaatcgactttgcca 8130890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 16179721 - 16179879
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    ||||| |||| ||||||||||  ||||||||||||||||||||| ||||| |||| ||| ||||||||||| |  ||  |||||||||| || ||||||     
T  16179721 ttatttaacaaagattcaatggaagagattatacctgacagagctttgaaaaaggaaagtgcatagacaggaagtgcaatcaggacagatttgagaaggg 16179820  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaatt 184  Q
     ||||| ||| ||| | ||||||||  |||| ||||| |   ||| |||||||||||||    
T  16179821 tcaacctaccaccaaaggaaaggaactgactatgccaactagacaatctagatttaatt 16179879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 48569382 - 48569228
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    ||||| |||| ||||||||||  |||||||||||||||  |||| ||||| |||| ||| ||||||||||| |  || |||||||| || || ||||| |    
T  48569382 ttatttaacaaagattcaatggaagagattatacctgatggagctttgaaaaaggaaagtgcatagacaggaagtgcagtcaggacggatttgagaagaa 48569283  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagattt 180  Q
     ||| ||||| ||| |||||||||| ||||| ||||| ||  ||| |||||||||    
T  48569282 tcaaacgaccaccaaaagaaaggaaccgactatgccaaccagacaatctagattt 48569228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 19919588 - 19919431
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||| | |||| |||||||||| ||| |||||||||||||  || || |||||  |||| || || |    
T  19919588 ttattaaacaaagattcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagttaggacgaactttagtagaa 19919489  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||| || || ||||||||||| ||  ||| ||||||||||||    
T  19919488 tcaaacgaccaccgaaagatagaaaccgactttgccaaccagacaatctagatttaat 19919431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 48930534 - 48930577
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  48930534 attatacctgacggagccttgaagaaggtaagagcatagacagg 48930577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 17077656 - 17077498
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    ||||| |||| ||||||||||  ||||||||||||||||||||| ||||| |||| ||| ||||||||| | |  ||  | |||||| | || |||||||    
T  17077656 ttattcaacaaagattcaatggaagagattatacctgacagagctttgaaaaaggaaagtgcatagacatgaagtgcaattaggacaaatttgagaagga 17077557  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaatt 184  Q
     ||| ||||| | | |||||||||| ||||| ||||| ||  ||| ||||| |||||||    
T  17077556 tcaaacgaccactaaaagaaaggaaccgactatgccaaccagacaatctagttttaatt 17077498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 17271098 - 17270944
Alignment:
Q  29 ttaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggacca 128  Q
    ||||| ||||||||||||  | ||||||||||||||||| | ||||| |||  |||||| |||||| | |  | ||||||||||||||||||||  | ||    
T  17271098 ttaaaaatagattcaatggaacagattatacctgacagaactttgaaaaagaaaagagcgtagacatgaagagaggtcaggacagacttcagaaaaatca 17270999  T
Q  129 accgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
    | ||||| ||| |||| || |||||||||| ||| || |||| | |||| |||||    
T  17270998 aacgacccccaaaagagagaaaacgacttttccaaccgaacaatttagaattaat 17270944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 16672353 - 16672289
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    |||||||||||| ||||||||||||||| |||| ||||||||||||  | ||||| |||||||||    
T  16672353 attatacctgacggagccttgaagaaggaaagaacatagacaggtagagaggtcaagacagactt 16672289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 52907401 - 52907329
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggta 98  Q
    ||||||||||||||||||||   |||||||||||||||  |||| |||||||||| ||| ||||| |||||||    
T  52907401 ttattaaacatagattcaatagaagagattatacctgatggagctttgaagaaggaaagggcataaacaggta 52907329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 36731674 - 36731740
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcataga 92  Q
    ||||| |||| ||||||||||  |||||||||||||||| |||| ||||| |||| |||||||||||    
T  36731674 ttatttaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagagcataga 36731740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 6825620 - 6825665
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggta 98  Q
    ||||||| |||| ||||||||||||||| |||||||||||||||||    
T  6825620 attatacttgacggagccttgaagaaggaaagagcatagacaggta 6825665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 43121033 - 43120876
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  ||||||||||||| |  |||| |||||||||| ||  ||||||||||  |  | |||||||||||| || | ||| |    
T  43121033 ttattaaacaaagattcaatggaagagattatacctaatggagctttgaagaaggaaaacgcatagacagacagagaggtcaggacagattttaaaagaa 43120934  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
    |||  ||||| ||| |||| | ||||||||| | ||| ||  |||||||| |||||||    
T  43120933 ccaggcgaccgccaaaagataagaaacgactattccaaccagacagtctaaatttaat 43120876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 52250457 - 52250412
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggta 98  Q
    |||||||||||| ||||||||||||||| ||| |||||||||||||    
T  52250457 attatacctgacggagccttgaagaaggaaagcgcatagacaggta 52250412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 198
Target Start/End: Original strand, 55367393 - 55367562
Alignment:
Q  29 ttaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggacca 128  Q
    ||||||| |||||| |||  ||||||||||||||||  ||| ||||| |||| |||||| |||||| | || | || |||||||||||| |  |  ||||    
T  55367393 ttaaacaaagattctatggaagagattatacctgacgcagctttgaaaaaggaaagagcgtagacaagcaaagaggacaggacagacttgatcaaaacca 55367492  T
Q  129 accgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacagg 198  Q
    | || |||||  | || || |||||||| ||||||||  ||| |||||||||||| || | |||||||||    
T  55367493 atcggcctccgaatgagagaaaacgactctgccacccggacaatctagatttaatggtatgcaacacagg 55367562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 14309369 - 14309517
Alignment:
Q  35 atagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgac 134  Q
    ||||||||||| | ||| || ||||||||| ||||  ||||||||| ||||||||||||| | | || |||||||||||| || || || || || || |    
T  14309369 atagattcaataagagaaatgatacctgacggagctatgaagaaggaaagagcatagacaagaagcgaggtcaggacagatttgaggagaactaatcggc 14309468  T
Q  135 ctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
    | ||  |||| |  || |||||||||||||||  || ||||||||||||    
T  14309469 ccccgaaagataaaaagcgactttgccaccccgccaatctagatttaat 14309517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 117
Target Start/End: Original strand, 23819350 - 23819437
Alignment:
Q  30 taaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    |||||| ||||||||||  ||||||||||| |||  |||| |||||||||| ||| ||||| ||||| |  | |||||||||||||||    
T  23819350 taaacaaagattcaatggaagagattatacttgatggagctttgaagaaggaaagcgcatatacaggcagagaggtcaggacagactt 23819437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 117
Target Start/End: Original strand, 50545024 - 50545115
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    |||||||| | ||||||||||  |||||||||||||||  || | |||||||||| ||  |||||||| ||||  | |||||||||||||||    
T  50545024 ttattaaataaagattcaatggaagagattatacctgatggacctttgaagaaggaaaacgcatagacgggtagagaggtcaggacagactt 50545115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Original strand, 10868437 - 10868495
Alignment:
Q  38 gattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    |||||||||  ||||||||||||||| ||||| || ||||||| ||||||||| |||||    
T  10868437 gattcaatggaagagattatacctgatagagctttaaagaaggaaagagcatatacagg 10868495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 14863815 - 14863745
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  ||||||||||||| |  |||| || ||||||| |||||||||||||||    
T  14863815 ttattcaacaaagattcaatggaagagattatacctaatggagctttaaagaaggaaagagcatagacagg 14863745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 21739847 - 21739777
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  |||||||||| ||||  |||| || ||||||| |||||||||||||||    
T  21739847 ttattcaacaaagattcaatggaagagattataactgatggagctttaaagaaggaaagagcatagacagg 21739777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 15481106 - 15481049
Alignment:
Q  37 agattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagaca 94  Q
    ||||||||||  |||||||||||||||  |||| |||||||| | |||||||||||||    
T  15481106 agattcaatggaagagattatacctgatggagctttgaagaaagaaagagcatagaca 15481049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 22733790 - 22733721
Alignment:
Q  66 gagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacc 135  Q
    |||||||||||||||  |||||||||||||| |  || || ||||| ||||||||||| ||||| |||||    
T  22733790 gagccttgaagaaggacagagcatagacaggaagtgcagttaggacggacttcagaagaaccaagcgacc 22733721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 22734082 - 22734014
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagaca 94  Q
    ||||| || ||||||||||||  ||||||||||| |||  ||||||||||||||   ||||||||||||    
T  22734082 ttattcaatatagattcaatggaagagattatacatgatggagccttgaagaagaacagagcatagaca 22734014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 117
Target Start/End: Complemental strand, 46908018 - 46907938
Alignment:
Q  37 agattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    ||||||||||  ||||||||||| |||  |||| |||||||||| ||||||||||| ||| |  | |||||| ||||||||    
T  46908018 agattcaatggaagagattatacttgatggagctttgaagaaggaaagagcatagataggcagagaggtcagaacagactt 46907938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 9e-66; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 13867198 - 13867024
Alignment:
Q  27 tattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggac 126  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||| |||||||| || |||||||||||||| ||||||||    
T  13867198 tattaaaaatagattcaatgacagagattatacctgacggagccttgaagaaggaaagagcatatacaggtaatgcagtcaggacagacttaagaaggac 13867099  T
Q  127 caaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacaggttc 201  Q
    ||||||||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13867098 caaccgacctccaaaagagagaaaacgactttgtcaccccaacagtctagatttaattgttttcaacacaggttc 13867024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 201
Target Start/End: Complemental strand, 1247945 - 1247770
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| ||||||||||||| |||||||||||| |||  ||| ||||| |||| ||||||||||||| |||||| ||||||||||||||| ||||| |    
T  1247945 ttattaaaaatagattcaatgacagagattatacccgacgaagctttgaaaaaggaaagagcatagacatgtaacgaggtcaggacagacttgagaagaa 1247846  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacaggttc 201  Q
    |||||||  ||||| |||| || || ||||||||||||||| | |||||||| ||||| |||||||||||||||||    
T  1247845 ccaaccgggctccaaaagagagaaagcgactttgccaccccgatagtctagacttaatggttttcaacacaggttc 1247770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 26 - 201
Target Start/End: Original strand, 5809362 - 5809537
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| ||||||| ||||| | |||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  5809362 ttattaaaaatagatttaatgacaaagattatacctgacggagctttgaagaaggaaagagcatagacaggtaacgcggtcaggacagacttaagaagga 5809461  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacaggttc 201  Q
    ||||| |||| |||||||| |  |||| ||||||||||||  ||| ||||| |||||| |  || |||||||||||    
T  5809462 ccaactgacccccataagagaaaaaacaactttgccaccctgacaatctagttttaatggcctttaacacaggttc 5809537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 3544485 - 3544285
Alignment:
Q  1 atcctcactccctccccnnnnnnnnttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaac 100  Q
    |||||||||||||||||        |||||||| ||||||||||||| |||||||||||||||| |||| |||||||||| ||| ||||||||||| ||     
T  3544485 atcctcactccctccccaaaaaaatttattaaaaatagattcaatgacagagattatacctgacggagctttgaagaaggaaagggcatagacaggcaat 3544386  T
Q  101 gcggtcaggacagacttcagaaggaccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacaggtt 200  Q
    | ||||| ||||| ||| ||||| | ||||||||| ||| |||| ||  | ||||||||||||||| | | |||||| || || || |||||||||||||    
T  3544385 gaggtcaagacagtcttgagaagaatcaaccgacccccaaaagagagagagcgactttgccaccccgataatctagactttatagtcttcaacacaggtt 3544286  T
Q  201 c 201  Q
    |    
T  3544285 c 3544285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 20987911 - 20988045
Alignment:
Q  1 atcctcactccctccccnnnnnnnnttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaac 100  Q
    |||||||||||||||||        |||||||| |||||||||||||||||||| |||| |||| |||| |||||||||| ||||||||||||||||| |    
T  20987911 atcctcactccctccccaaaaaaatttattaaaaatagattcaatgatagagatgatacatgacggagctttgaagaaggaaagagcatagacaggtagc 20988010  T
Q  101 gcggtcaggacagacttcagaaggaccaaccgacc 135  Q
    | |||||||||| |||| ||||| |||||||||||    
T  20988011 gaggtcaggacacacttgagaagaaccaaccgacc 20988045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 6051384 - 6051541
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||| | |||| |||||||||| ||| |||||||||||||  || |||||||||||||| ||||| |    
T  6051384 ttattaaacaaagattcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaa 6051483  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||| ||||| ||||||||||| ||  ||| ||||||||||||    
T  6051484 tcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaat 6051541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 28358681 - 28358829
Alignment:
Q  35 atagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgac 134  Q
    ||||||||||||| |||||||||||||||| |||| |||||||||| ||||||||||||| | | ||  || |||||| |||| ||||| | ||| ||||    
T  28358681 atagattcaatgagagagattatacctgacggagctttgaagaaggaaagagcatagacatgaagcgatgttaggacaaacttaagaagaatcaagcgac 28358780  T
Q  135 ctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
    | ||  | || || |||||||||||||||||| | | ||||||||||||    
T  28358781 ccccgaaggatagaaaacgactttgccaccccgataatctagatttaat 28358829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 19014339 - 19014166
Alignment:
Q  29 ttaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggacca 128  Q
    ||||| ||||||||||||  |||||||||| |||||||||| |||||||||| ||||||||||||| | | |  ||||| |||| |||| |||| |||||    
T  19014339 ttaaaaatagattcaatggaagagattatatctgacagagctttgaagaaggaaagagcatagacaagaagccaggtcaagacaaacttgagaaagacca 19014240  T
Q  129 accgacctccataagaaaggaaacgactttgcca-ccccaacagtctagatttaattgttttcaacacaggttc 201  Q
    |||| || ||| |||| || ||  |||| ||||| |||| ||||||||| |||||| || |||| || ||||||    
T  19014239 accggcccccaaaagatagaaagtgactatgccacccccgacagtctagttttaatagtattcatcataggttc 19014166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 25504351 - 25504197
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| | |||||||| | ||||||||||||||||| |||| |||||||| | ||||||||||||||| |  | |||||  ||||| || ||||| |    
T  25504351 ttattaaataaagattcaagggtagagattatacctgacggagctttgaagaaagaaagagcatagacaggaagagaggtcaacacagatttgagaagaa 25504252  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagattt 180  Q
    |||| || || ||| |||| ||||||||||| | ||| ||  |||||||||||||    
T  25504251 ccaaacggccaccaaaagagaggaaacgactattccaacctgacagtctagattt 25504197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 183
Target Start/End: Original strand, 5497891 - 5498024
Alignment:
Q  50 gagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagga 149  Q
    ||||||||||||||  |||| |||||||||| ||  ||||||||||| || | |||||||||||| || ||||| ||||| ||||| ||| |||| || |    
T  5497891 gagattatacctgatggagctttgaagaaggaaattgcatagacaggcaaagaggtcaggacagatttgagaagaaccaagcgaccaccaaaagatagaa 5497990  T
Q  150 aacgactttgccaccccaacagtctagatttaat 183  Q
    | ||||| | ||| ||| ||||||||||||||||    
T  5497991 accgactattccaacccgacagtctagatttaat 5498024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 35541815 - 35541912
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    |||||||||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||| |||||||||||||  || |||||||| ||||| |||||    
T  35541815 ttattaaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacggactttagaag 35541912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 53 - 132
Target Start/End: Original strand, 45271049 - 45271128
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccg 132  Q
    |||||||||||| ||||||||||||||| ||||||||||||||| |  | ||||| ||||||||| || || ||||||||    
T  45271049 attatacctgacggagccttgaagaaggaaagagcatagacaggaagagaggtcaagacagacttaaggagaaccaaccg 45271128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 123
Target Start/End: Complemental strand, 40562914 - 40562820
Alignment:
Q  29 ttaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    ||||| ||||||||||||| ||| || |||||||||||||| ||||| || | ||| ||||||||||| | || |||||||||| |||| |||||    
T  40562914 ttaaaaatagattcaatgagagaaatgatacctgacagagctttgaaaaaagaaagcgcatagacaggaaccgaggtcaggacaaactttagaag 40562820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 47622430 - 47622337
Alignment:
Q  32 aacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||| ||||||||||  |||||||||| ||||| |||| ||||| |||| ||| ||||||||||| |  || |||||||||||||| |||||||    
T  47622430 aacagagattcaatggaagagattatatctgacggagctttgaaaaaggaaagtgcatagacaggaagagcagtcaggacagactttagaagga 47622337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 20796441 - 20796511
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  |||||||||||||||  |||| || ||||||| |||||||||||||||    
T  20796441 ttattcaacaaagattcaatggaagagattatacctgatggagctttaaagaaggaaagagcatagacagg 20796511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 49264324 - 49264166
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    ||||| |||| ||||||||||  |||||||||||||||  |||| || ||||| | ||||||||||||||| ||||  ||||| || |  |||| |||||    
T  49264324 ttattcaacaaagattcaatggaagagattatacctgatggagctttaaagaaagaaagagcatagacaggcaacgaagtcagaactgctttcaaaagga 49264225  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaatt 184  Q
    |||| ||||| ||  | || || || ||||| | ||| || |||| |||||||||||||    
T  49264224 ccaagcgaccaccgaacgagagaaaccgactattccaacctaacaatctagatttaatt 49264166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 32352647 - 32352514
Alignment:
Q  50 gagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagga 149  Q
    |||||||||||||   |||| |||||||||| ||| ||||||||||| |  | ||||| |||||| || || || ||||| ||||| ||| |||| || |    
T  32352647 gagattatacctgctggagctttgaagaaggaaagtgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaa 32352548  T
Q  150 aacgactttgccaccccaacagtctagatttaat 183  Q
    | ||||| | ||| ||| ||||||||||||||||    
T  32352547 accgactattccaacccgacagtctagatttaat 32352514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 39431067 - 39431176
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    ||||| |||| ||||||||||  |||||||||||||||  |||| || || |||| ||||||||||||||| ||||   ||||||| |  |||| |||||    
T  39431067 ttattcaacaaagattcaatggaagagattatacctgatggagctttaaataaggaaagagcatagacaggcaacgaattcaggactgctttcaaaagga 39431166  T
Q  126 ccaaccgacc 135  Q
    |||| |||||    
T  39431167 ccaagcgacc 39431176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 48072761 - 48072628
Alignment:
Q  50 gagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagga 149  Q
    |||||||||||||   |||| |||||||||| ||| ||||||||||| |  | ||||| |||||| || || || ||||| ||||| ||| |||| || |    
T  48072761 gagattatacctgctggagctttgaagaaggaaagcgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaa 48072662  T
Q  150 aacgactttgccaccccaacagtctagatttaat 183  Q
    | ||||| | ||| ||| ||||||||||||||||    
T  48072661 accgactattccaacccgacagtctagatttaat 48072628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 183
Target Start/End: Original strand, 51052702 - 51052819
Alignment:
Q  66 gagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaaggaaacgactttgccaccc 165  Q
    |||| |||||||||| ||| |||||||||||||  || |||||||| ||||| || || | ||| ||||| ||  |||| ||||| ||||||||||| ||    
T  51052702 gagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacggactttagtagaatcaaacgaccaccgaaagataggaaccgactttgccaacc 51052801  T
Q  166 caacagtctagatttaat 183  Q
      ||| ||||||||||||    
T  51052802 agacaatctagatttaat 51052819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 42475227 - 42475154
Alignment:
Q  56 atacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaa 129  Q
    ||||||||| ||||||||||||||| ||| ||||| ||||| ||||  | |||| |||||||||  ||||||||    
T  42475227 atacctgacggagccttgaagaaggaaagggcataaacaggcaacgatgacagggcagacttcaacaggaccaa 42475154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 7396056 - 7395988
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    |||||||||||||||  |||| |||||||||| |||| |||||||||  || | ||||| |||||||||    
T  7396056 agagattatacctgatggagctttgaagaaggaaagatcatagacagacaaagaggtcaagacagactt 7395988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 17708862 - 17708930
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    |||||||||||||||  |||| |||||||||| ||| ||||||||||| |  | |||||| ||||||||    
T  17708862 agagattatacctgatggagctttgaagaaggaaagtgcatagacaggcagagaggtcagaacagactt 17708930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 19042904 - 19042976
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggta 98  Q
    |||||||||| ||||||||| | |||||||||||||||  ||||   |||||||| ||| ||||| |||||||    
T  19042904 ttattaaacaaagattcaataaaagagattatacctgatggagctcagaagaaggaaagggcataaacaggta 19042976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 26721437 - 26721505
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    |||||||||||||||  |||| |||||||||| ||| ||||||||||| |  | |||||||||| ||||    
T  26721437 agagattatacctgatggagctttgaagaaggaaagcgcatagacaggcagagaggtcaggacaaactt 26721505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 36099745 - 36099817
Alignment:
Q  56 atacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggacca 128  Q
    ||||||||| |||||||||| || | ||||||||| ||||| | ||  | |||||||||||||||||| ||||    
T  36099745 atacctgacggagccttgaaaaaagaaagagcataaacaggaagcgacgacaggacagacttcagaagcacca 36099817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 11197134 - 11197271
Alignment:
Q  27 tattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggac 126  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |||  |||| |||||||||||||||||||||||||    
T  11197134 tattaaacatagattcaatgatagagattatacctgacggagccttgaagaatgaaagagcataaacaaataacacggtcaggacagacttcagaaggac 11197233  T
Q  127 caaccgacctccataagaaaggaaacgactttgccacc 164  Q
    ||||||||||||||| ||||| ||||| ||||||||||    
T  11197234 caaccgacctccatatgaaagaaaacggctttgccacc 11197271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 2207172 - 2207024
Alignment:
Q  35 atagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgac 134  Q
    ||||| ||||||  ||||||| ||||||   ||||||||||||||| ||||||||||||||||| ||||| || ||| ||||| | ||| | ||| ||||    
T  2207172 atagaatcaatggaagagattgtacctgctggagccttgaagaaggaaagagcatagacaggtagcgcggacaagacggactttacaagaatcaaacgac 2207073  T
Q  135 ctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
    ||||| | ||||| || ||||||||||| |   ||||||||||||||||    
T  2207072 ctccaaaggaaagaaaccgactttgccaactggacagtctagatttaat 2207024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 13416476 - 13416603
Alignment:
Q  35 atagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgac 134  Q
    |||||||| |||  ||||||| ||||||   ||||||||||||||| ||||||||||||| ||| |||||||| || |||||| ||||| | ||| ||||    
T  13416476 atagattctatggaagagattgtacctgctggagccttgaagaaggaaagagcatagacatgtagcgcggtcaagatagactttagaagaatcaagcgac 13416575  T
Q  135 ctccataagaaaggaaacgactttgcca 162  Q
    ||||| | ||||| || |||||||||||    
T  13416576 ctccaaatgaaagaaaccgactttgcca 13416603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 33583764 - 33583630
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagg 148  Q
    |||||||||||||||| |||| ||||| |||| ||||||||||||||| | || |||||||||| |||| ||||  || ||||| || ||  | || ||     
T  33583764 agagattatacctgacggagctttgaaaaaggaaagagcatagacaggaagcgaggtcaggacaaacttgagaaaaacgaaccggcccccggatgataga 33583665  T
Q  149 aaacgactttgccaccccaacagtctagatttaat 183  Q
    || ||||||||||||||| ||| ||||||||||||    
T  33583664 aatcgactttgccaccccgacaatctagatttaat 33583630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 183
Target Start/End: Original strand, 13551387 - 13551520
Alignment:
Q  50 gagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagga 149  Q
    ||||||||||||||  |||| |||||||||| ||| ||||||||||| || | |||||||||||| || ||||| ||||| ||||| ||| |||| || |    
T  13551387 gagattatacctgatggagctttgaagaaggaaagtgcatagacaggcaaagaggtcaggacagatttgagaagaaccaagcgaccaccaaaagatagaa 13551486  T
Q  150 aacgactttgccaccccaacagtctagatttaat 183  Q
    | ||||| | ||| ||  ||||||||||||||||    
T  13551487 accgactattccaacctgacagtctagatttaat 13551520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 26147023 - 26147093
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||  | ||||| ||||||||| |||||    
T  26147023 attatacctgacggagccttgaagaaggaaagagcatagacaggtagagaggtcaagacagactttagaag 26147093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 15018459 - 15018528
Alignment:
Q  27 tattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||||| | |||||||||| ||||||||||||||||| |||| |||||||||| ||| |||||||||||    
T  15018459 tattaaataaagattcaatggtagagattatacctgacggagctttgaagaaggaaagtgcatagacagg 15018528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 49 - 180
Target Start/End: Complemental strand, 6724968 - 6724837
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagg 148  Q
    ||||||| ||||||   ||||||||||||||| ||||||||||||||||| | || ||| |||| |||| | ||| | ||| ||||||||| | |||||     
T  6724968 agagattgtacctgctggagccttgaagaaggaaagagcatagacaggtagcacgatcaagacatactttaaaagaatcaaacgacctccaaatgaaaga 6724869  T
Q  149 aaacgactttgccaccccaacagtctagattt 180  Q
    || ||||||||||| |   |||||||||||||    
T  6724868 aaccgactttgccaactagacagtctagattt 6724837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 43311067 - 43311112
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggta 98  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||    
T  43311067 attatacctgacggagccttgaagaaggaaagagcatagacaggta 43311112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 44028549 - 44028481
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    ||||||||||| |||  ||||||||||||||| |||||||||||||| ||  ||||||| |||||||||    
T  44028549 agagattatacatgatggagccttgaagaaggaaagagcatagacagatagagcggtcaagacagactt 44028481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 20004749 - 20004812
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggaca 112  Q
    ||||||||||||||| ||||| ||||||||||  |||| ||||||||||||||  |||||||||    
T  20004749 agagattatacctgatagagctttgaagaaggagagagtatagacaggtaacgaagtcaggaca 20004812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 12646331 - 12646401
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  |||||||||||||| | |||| ||||| |||| |||||||||||||||    
T  12646331 ttatttaacaaagattcaatggaagagattatacctggcggagctttgaaaaaggaaagagcatagacagg 12646401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 22724798 - 22724729
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacag 95  Q
    ||||||||||  ||||||||| |||||||||||||| ||  ||| || ||||||| ||||||||||||||    
T  22724798 ttattaaacaatgattcaatggtagagattatacctaacgaagctttaaagaaggaaagagcatagacag 22724729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 34357593 - 34357662
Alignment:
Q  30 taaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaa 99  Q
    |||| ||| ||||||||  ||| |||||| || || ||||||||||||||| ||||||||||||||||||    
T  34357593 taaaaataaattcaatggaagaaattatatctaacggagccttgaagaaggaaagagcatagacaggtaa 34357662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 43722376 - 43722321
Alignment:
Q  35 atagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcata 90  Q
    ||||| ||||||  ||| |||||||||||| ||||||||||||||| |||||||||    
T  43722376 atagaatcaatggaagaaattatacctgacggagccttgaagaaggaaagagcata 43722321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 8065609 - 8065551
Alignment:
Q  37 agattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacag 95  Q
    ||||||||||  |||||||||||||||  |||| |||||||||| || |||||||||||    
T  8065609 agattcaatggaagagattatacctgatggagctttgaagaaggaaaaagcatagacag 8065551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 10289385 - 10289331
Alignment:
Q  66 gagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcag 120  Q
    |||| |||||||||| ||||||||||||||| | || ||||||||| ||||||||    
T  10289385 gagctttgaagaaggaaagagcatagacaggaagcgaggtcaggaccgacttcag 10289331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 10689346 - 10689416
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    ||||||| |||| || |||||||||||| |||||||||||||||||  | ||||| |||| |||| |||||    
T  10689346 attatacatgacggatccttgaagaaggaaagagcatagacaggtagagaggtcaagacatactttagaag 10689416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 35488630 - 35488718
Alignment:
Q  37 agattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    ||||||||||  |||||||||||||||  |||| || ||||||| || |||||||||||| || | |||||| || || || |||||||    
T  35488630 agattcaatggaagagattatacctgaaggagctttaaagaaggaaaaagcatagacaggcaaagaggtcagaactgatttgagaagga 35488718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 6245865 - 6246022
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| ||| ||||||||| || ||||||||||||| |||| |||||||||| ||||||||||||| |||||||||||||||||||||| |||| ||    
T  6245865 ttattaaatataaattcaatgacagggattatacctgacggagctttgaagaaggaaagagcatagacaagtaacgcggtcaggacagacttaagaatga 6245964  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
    ||| | |||| |||||||| || ||||||||| |||||||||||||||||| ||||||    
T  6245965 ccaccagaccaccataagagagcaaacgacttcgccaccccaacagtctagttttaat 6246022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 25193869 - 25194041
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||  | || ||||| |||| |||| | |||||    
T  25193869 ttataaaaaatagattcaatgatagagattatacctgacagagctttgaagaaggaaagagcatagacagtaagcgaggtcaagacaaactttaaaagga 25193968  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacagg 198  Q
     ||||||||| || ||||| || || ||||| ||||||||| ||| ||| || |||||||| | |||||||||    
T  25193969 tcaaccgaccaccgtaagatagaaagcgactctgccaccccgacaatctggacttaattgtatgcaacacagg 25194041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 9923382 - 9923518
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||| | |||||||||||  || |||| ||| ||||| ||||| |    
T  9923382 ttattaaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagtgtatagacaggtagagcagtcaagacggacttaagaagaa 9923481  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgcca 162  Q
    |||| ||||| ||| |||||||||| |||||||||||    
T  9923482 ccaaacgaccaccaaaagaaaggaatcgactttgcca 9923518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 7925167 - 7925324
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||| | |||| |||||||||| ||| |||||||||||||  || |||||||||||||| ||||| |    
T  7925167 ttattaaacaaagattcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaa 7925266  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||| ||||| ||||||  ||| ||  ||| ||||||||||||    
T  7925267 tcaaacgaccaccgaaagataggaaccgacttgnccaaccagacaatctagatttaat 7925324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 29721267 - 29721113
Alignment:
Q  29 ttaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggacca 128  Q
    ||||||||||||||||||  |||||||||||||||| |||| ||||| |||| ||||||||||||||| || | || |||||||||||| || |  | ||    
T  29721267 ttaaacatagattcaatggaagagattatacctgacggagctttgaaaaaggaaagagcatagacaggcaaagaggacaggacagacttgagcaaaatca 29721168  T
Q  129 accgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
    | || || ||  | || ||||||||||| |||||||| |||| ||||||||||||    
T  29721167 atcggcccccgaatgagaggaaacgactctgccaccctaacaatctagatttaat 29721113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 32267335 - 32267492
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  ||||||||||||||||| ||| ||||| |||| ||| |||||||||||||  || |||| ||| |||||  |||| |    
T  32267335 ttattaaacaaagattcaatggaagagattatacctgacaaagctttgaaaaaggaaagtgcatagacaggtagagcagtcatgacggacttttgaagaa 32267434  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||||||||| ||||||||||| ||  ||| ||||||||||||    
T  32267435 tcaaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagatttaat 32267492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 180
Target Start/End: Complemental strand, 4987424 - 4987270
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| | |||||||| | |||| |||||||||||| |||| |||||||| | |||||||||||||||||  | |||||  ||||| || ||||| |    
T  4987424 ttattaaataaagattcaagggtagaaattatacctgacggagctttgaagaaagaaagagcatagacaggtagagaggtcaacacagatttgagaagaa 4987325  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagattt 180  Q
    |||| || || ||| |||||||||||||||| | ||| ||  |||||||||||||    
T  4987324 ccaaacggccaccaaaagaaaggaaacgactattccaacctgacagtctagattt 4987270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 15539838 - 15539935
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    |||||||| ||||||||||||||||| || ||||||||| |||| |||||||||| ||||||||| ||||| |  | ||||| ||||||||| |||||    
T  15539838 ttattaaaaatagattcaatgatagaaatgatacctgacggagctttgaagaaggaaagagcataaacaggcagagaggtcaagacagactttagaag 15539935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 8300584 - 8300681
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    |||||||||| ||||||||||  |||||||||||||| | |||| ||||| |||| ||| |||||||||||||  || |||||||| ||||| |||||    
T  8300584 ttattaaacaaagattcaatggaagagattatacctgccggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacggactttagaag 8300681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 41664727 - 41664570
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  | |||||||||||||| |||| ||||| |||| ||| || |||||||||   || |||||||| ||||| || || |    
T  41664727 ttattaaacaaagattcaatggaatagattatacctgacggagctttgaaaaaggaaagtgcgtagacaggtggagcagtcaggacggactttagtagaa 41664628  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||| ||||| ||||||||||| ||  ||| ||||||||||||    
T  41664627 tcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaat 41664570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 36493189 - 36493253
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||  | ||||| |||||||||    
T  36493189 attatacctgacggagccttgaagaaggaaagagcatagacaggtagagaggtcaagacagactt 36493253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 36157935 - 36158005
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    |||||||||| ||||||||||  |||||||||||||||  |||| |||||||||| ||| |||||||||||    
T  36157935 ttattaaacaaagattcaatggaagagattatacctgatggagctttgaagaaggaaagcgcatagacagg 36158005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 12332656 - 12332732
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaa 129  Q
    |||||||||||  |||||||||||||||  ||||||||||||||||  | ||||| ||||||||| ||||| |||||    
T  12332656 attatacctgatggagccttgaagaaggagagagcatagacaggtagagaggtcaagacagactttagaagaaccaa 12332732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 49 - 117
Target Start/End: Complemental strand, 26774583 - 26774515
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    ||||||||||| |||| |||| ||||||||||  |||||||||| ||||||||  ||||||||||||||    
T  26774583 agagattatacatgacggagctttgaagaaggagagagcatagataggtaacgaagtcaggacagactt 26774515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 13878846 - 13878776
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||| |||||||||||    
T  13878846 ttatttaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacagg 13878776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 24794501 - 24794571
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  |||||||||||||||  |||| || ||||||| |||||||||||||||    
T  24794501 ttattcaacaaagattcaatggaagagattatacctgatggagctttaaagaaggaaagagcatagacagg 24794571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 23942879 - 23942938
Alignment:
Q  37 agattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||||||||  ||||||||||| |||  |||| |||||||||| |||||||||||||||    
T  23942879 agattcaatggaagagattatacatgatggagctttgaagaaggaaagagcatagacagg 23942938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 36025277 - 36025364
Alignment:
Q  1 atcctcactccctccccnnnnnnnnttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagca 88  Q
    |||||||||||||||||        |||||||| ||||| | ||||  |||||||||||||||| |||| |||||||||| |||||||    
T  36025277 atcctcactccctccccaaatttttttattaaaaatagagttaatggaagagattatacctgacggagctttgaagaaggaaagagca 36025364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 11393690 - 11393620
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  |||||||||||||||  |||| || ||||| | |||||||||||||||    
T  11393690 ttattcaacaaagattcaatggaagagattatacctgatggagctttaaagaatgaaagagcatagacagg 11393620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 5585762 - 5585831
Alignment:
Q  66 gagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacc 135  Q
    |||||||||||||||  |||||||||||||| |  || || ||||| ||||||||||| ||||| |||||    
T  5585762 gagccttgaagaaggacagagcatagacaggaagtgcagttaggacggacttcagaagaaccaagcgacc 5585831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 12341361 - 12341418
Alignment:
Q  39 attcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||||||  |||||||||||| |||||||| ||||| |||| |||||| ||||||||    
T  12341361 attcaatggaagagattatacccgacagagctttgaaaaaggaaagagcgtagacagg 12341418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 17700261 - 17700358
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    ||||| |||| |||||||||   |||||||||| ||||| |||| ||||| |||| ||| ||||||||||| | ||| |||| |||||| || |||||    
T  17700261 ttatttaacaaagattcaatagaagagattatatctgacggagctttgaaaaaggaaagtgcatagacaggaagcgcagtcaagacagatttgagaag 17700358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 5585470 - 5585538
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagaca 94  Q
    ||||| || ||||||||||||  ||||||||||| |||  ||||||||||||||   ||||||||||||    
T  5585470 ttattcaatatagattcaatggaagagattatacatgatggagccttgaagaagaacagagcatagaca 5585538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 7453133 - 7453205
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggta 98  Q
    |||||||| | |||||||| |  |||||||||||||||  |||| |||||||| | ||| |||||||||||||    
T  7453133 ttattaaataaagattcaagggaagagattatacctgatggagctttgaagaaagaaagtgcatagacaggta 7453205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 117
Target Start/End: Original strand, 17659645 - 17659713
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    ||||||||||| |||  |||| || ||||||| ||| ||||||||||| || | |||||||||||||||    
T  17659645 agagattatacttgatggagcttttaagaaggaaagcgcatagacaggcaaagaggtcaggacagactt 17659713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 43516106 - 43516000
Alignment:
Q  27 tattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggac 126  Q
    ||||||| ||||||||||||| |||||||||||||||  ||||||||||||||| |||||||||||||||||| || |||||||||||||| ||||||||    
T  43516106 tattaaaaatagattcaatgacagagattatacctgatggagccttgaagaaggaaagagcatagacaggtaatgcagtcaggacagactttagaaggac 43516007  T
Q  127 caaccga 133  Q
    |||||||    
T  43516006 caaccga 43516000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 30 - 183
Target Start/End: Original strand, 9691208 - 9691361
Alignment:
Q  30 taaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaa 129  Q
    |||| |||||||||| |||||||||||||||||||||| | |||||||||| ||||||||| ||||| | ||  || ||||||||||| ||||| || ||    
T  9691208 taaaaatagattcaaagatagagattatacctgacagaactttgaagaaggaaagagcataaacaggaagcgaagtaaggacagacttgagaagaactaa 9691307  T
Q  130 ccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
    ||||||  || | || || |||||||||||||||||| | | ||||||||||||    
T  9691308 ccgaccctcaaaggatagaaaacgactttgccaccccgataatctagatttaat 9691361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 19756048 - 19756205
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  ||||||||||||||||||||  ||||| |||| ||| ||||||||||||| ||| |||||||| ||||| || || |    
T  19756048 ttattaaacaaagattcaatggaagagattatacctgacagagttttgaaaaaggaaagtgcatagacaggtagcgcagtcaggacggactttagtagaa 19756147  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||||||||| ||||||||||| ||  ||| ||||||||||||    
T  19756148 tcaaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagatttaat 19756205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 19783758 - 19783601
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  ||||||||||||||||||||  ||||| |||| ||| ||||||||||||| ||| |||||||| ||||| || || |    
T  19783758 ttattaaacaaagattcaatggaagagattatacctgacagagttttgaaaaaggaaagtgcatagacaggtagcgcagtcaggacggactttagtagaa 19783659  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||||||||| ||||||||||| ||  ||| ||||||||||||    
T  19783658 tcaaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagatttaat 19783601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 23641950 - 23641793
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||| | |||| |||||||||| ||| |||||||||||||  || |||||||||||||| ||||| |    
T  23641950 ttattaaacaaagattcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaa 23641851  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||| ||||| ||||||||||| ||  ||| ||||||||||||    
T  23641850 tcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaat 23641793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 23647608 - 23647451
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||| | |||| |||||||||| ||| |||||||||||||  || |||||||||||||| ||||| |    
T  23647608 ttattaaacaaagattcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaa 23647509  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     |||  |||| ||  |||| ||||| ||||||||||| ||  ||| ||||||||||||    
T  23647508 tcaaatgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaat 23647451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 184
Target Start/End: Complemental strand, 19733336 - 19733189
Alignment:
Q  37 agattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacct 136  Q
    ||||||||||  |||||||||||||||| |||| ||||| |||| ||||||||||||||| |  || ||||||||||| || ||||||| ||| |||||     
T  19733336 agattcaatggaagagattatacctgacggagctttgaaaaaggaaagagcatagacaggaagggcagtcaggacagatttgagaaggatcaatcgacca 19733237  T
Q  137 ccataagaaaggaaacgactttgccaccccaacagtctagatttaatt 184  Q
    ||| |||||||||| ||||| ||| | || |||| ||||| |||||||    
T  19733236 ccaaaagaaaggaaccgactatgctaaccaaacaatctagctttaatt 19733189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 176
Target Start/End: Complemental strand, 29553160 - 29553010
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| | ||||||||||  |||||||||||||||| |||| |||||||||| ||||||||||||||| |  |  |||| |||||  || ||||| |    
T  29553160 ttattaaataaagattcaatggaagagattatacctgacggagctttgaagaaggaaagagcatagacaggcagagaagtcaagacagctttgagaagaa 29553061  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctag 176  Q
    |||| ||||| ||| |||||||||||| ||| | ||| ||| |||||||||    
T  29553060 ccaaacgaccaccaaaagaaaggaaacaactattccaacccgacagtctag 29553010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 1827899 - 1827742
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||| ||||||||||| |  || |||||||| ||||| ||||| |    
T  1827899 ttattaaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacaggaagagcagtcaggacggactttagaagaa 1827800  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| || || ||  |||| ||||| ||||||||||| ||  ||| ||||||||||||    
T  1827799 tcaaacggccaccgaaagagaggaaccgactttgccaaccagacaatctagatttaat 1827742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 47419585 - 47419742
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||| | |||| ||||||||||  || ||||||||||| |  || |||||||| ||||| || || |    
T  47419585 ttattaaacaaagattcaatggaagagattatacctgtcggagctttgaagaaggagagtgcatagacagggagagcagtcaggaccgactttagtagaa 47419684  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||| ||||| ||||||||||| ||  ||| ||||||||||||    
T  47419685 tcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaat 47419742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 183
Target Start/End: Original strand, 2072330 - 2072478
Alignment:
Q  35 atagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgac 134  Q
    ||||| ||||||| |||||||||| ||||| |||| |||||||| | ||||||||||||| | |  | ||||| |||| | || ||||| |||||||| |    
T  2072330 atagagtcaatgaaagagattatatctgacggagctttgaagaaagaaagagcatagacatgcagagaggtcatgacaaatttgagaagaaccaaccggc 2072429  T
Q  135 ctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
    ||||  | || || |||||||||||||||||| | |||||||| |||||    
T  2072430 ctccgaaggagagaaaacgactttgccaccccgatagtctagacttaat 2072478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 38296495 - 38296586
Alignment:
Q  35 atagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggac 126  Q
    ||||||||||||  | | |||||||||||| ||||||||||||||| |||||||||||||||||  | |||||  |||||||| ||||||||    
T  38296495 atagattcaatggaaaaaattatacctgacggagccttgaagaaggaaagagcatagacaggtagagaggtcaaaacagacttgagaaggac 38296586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 19162505 - 19162371
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagg 148  Q
    ||||||| ||||||   ||||||||||||||| ||||||||||||||||| |||||||| |||| |||| | ||| | ||| ||||||||| | |||||     
T  19162505 agagattgtacctgctggagccttgaagaaggaaagagcatagacaggtagcgcggtcaagacatactttaaaagaatcaagcgacctccaaaggaaaga 19162406  T
Q  149 aaacgactttgccaccccaacagtctagatttaat 183  Q
    || | ||||||||| |   ||||||||||| ||||    
T  19162405 aacctactttgccaactagacagtctagatctaat 19162371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 19115217 - 19115286
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacag 95  Q
    |||||||| | |||||||||| ||||||||||||||||| |||| |||||||||| ||| ||||||||||    
T  19115217 ttattaaataaagattcaatggtagagattatacctgacggagctttgaagaaggaaagtgcatagacag 19115286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 40688907 - 40689016
Alignment:
Q  71 ttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaaggaaacgactttgccaccccaaca 170  Q
    |||||||||| |||||||||||||| || ||| |||| ||||||||| | ||| | ||| ||||||||| ||||||| || ||||||||||| |   |||    
T  40688907 ttgaagaaggaaagagcatagacagatagcgcagtcaagacagactttaaaagaatcaagcgacctccaaaagaaagaaaccgactttgccaactagaca 40689006  T
Q  171 gtctagattt 180  Q
    ||||||||||    
T  40689007 gtctagattt 40689016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 19648476 - 19648606
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| | |||||||| | |||| |||||||||||| |||| |||||||| | |||||||||||||||||  | |||||  ||||| || ||||| |    
T  19648476 ttattaaataaagattcaagggtagaaattatacctgacggagctttgaagaaagaaagagcatagacaggtagagaggtcaacacagatttgagaagaa 19648575  T
Q  126 ccaaccgacctccataagaaaggaaacgact 156  Q
    |||| || ||  || |||| |||||||||||    
T  19648576 ccaaacggccagcaaaagagaggaaacgact 19648606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 8935855 - 8935924
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacag 95  Q
    |||||||| | | ||||||||  |||||||||||||||| |||| |||||||||| ||||||||||||||    
T  8935855 ttattaaataaaaattcaatggcagagattatacctgacggagctttgaagaaggaaagagcatagacag 8935924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 42952890 - 42952820
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  |||||||||||||||  |||| || ||||||| |||||||||||||||    
T  42952890 ttattcaacaaagattcaatggaagagattatacctgatggagctttaaagaaggaaagagcatagacagg 42952820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 48312875 - 48312945
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||| |||||||||||    
T  48312875 ttatttaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacagg 48312945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 54482519 - 54482449
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||| |||||||||||    
T  54482519 ttatttaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacagg 54482449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 23872812 - 23872679
Alignment:
Q  50 gagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagga 149  Q
    |||||||||||||   |||| |||||||||| ||| ||||||||||| |  | ||||| |||||| || || || ||||| ||||| ||| |||| || |    
T  23872812 gagattatacctgctggagctttgaagaaggaaagtgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaa 23872713  T
Q  150 aacgactttgccaccccaacagtctagatttaat 183  Q
    | ||||| | ||| ||| ||||||||||||||||    
T  23872712 accgactattccaacccgacagtctagatttaat 23872679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 117
Target Start/End: Original strand, 34976733 - 34976813
Alignment:
Q  37 agattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    ||||||||||  |||||||||||||||  |||| |||||||||| ||| ||||| ||||| |  | |||||||||||||||    
T  34976733 agattcaatggaagagattatacctgatggagctttgaagaaggaaagcgcataaacaggcagagaggtcaggacagactt 34976813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 183
Target Start/End: Original strand, 2365810 - 2365943
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagg 148  Q
    ||||||||||||||||||||  ||||| ||||  ||| ||||||||||||| |  |||| ||||||||| || |  ||||| ||||| ||| |||| ||     
T  2365810 agagattatacctgacagagt-ttgaaaaaggagagaacatagacaggtaaggaagtcaagacagacttaaggataaccaatcgaccaccaaaagacaga 2365908  T
Q  149 aaacgactttgccaccccaacagtctagatttaat 183  Q
    |||||||| | ||| ||  ||| ||||||||||||    
T  2365909 aaacgactcttccaaccagacaatctagatttaat 2365943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 15741001 - 15741055
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaagg 80  Q
    |||||||||| ||||||||||  |||||||||||||||| |||| ||||| ||||    
T  15741001 ttattaaacaaagattcaatggaagagattatacctgacggagctttgaaaaagg 15741055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 55725066 - 55724996
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  |||||||||||| ||| |||| ||||| |||| |||| ||||||||||    
T  55725066 ttatttaacaaagattcaatggaagagattatacccgacggagctttgaaaaaggaaagaacatagacagg 55724996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 183
Target Start/End: Original strand, 55299426 - 55299559
Alignment:
Q  50 gagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagga 149  Q
    |||||||||||||   |||| |||||||||| ||| ||||||||||| |  | ||||| |||||| || || || ||||| ||||| ||| |||| || |    
T  55299426 gagattatacctgttggagctttgaagaaggaaagtgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaaaagagagaa 55299525  T
Q  150 aacgactttgccaccccaacagtctagatttaat 183  Q
    | ||||| | ||| ||| ||| ||||||||||||    
T  55299526 accgactattccaacccgacaatctagatttaat 55299559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 105202 - 105045
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||| | |||| |||||||||| ||| |||||||||||||  || |||||||||||||| ||||| |    
T  105202 ttattaaacaaagattcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaa 105103  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||| ||||| ||||||||||| ||  ||| ||||||||||||    
T  105102 tcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaat 105045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 4937487 - 4937330
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||| | |||| |||||||||| ||| |||||||||||||  || |||||||||||||| ||||| |    
T  4937487 ttattaaacaaagattcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaa 4937388  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||| ||||| ||||||||||| ||  ||| ||||||||||||    
T  4937387 tcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaat 4937330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 17721416 - 17721552
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||| |||||||||||||  || ||||||||  |||| ||||| |    
T  17721416 ttattaaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacgaacttaagaagaa 17721515  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgcca 162  Q
    |||| ||||| ||| |||||||||| |||||||||||    
T  17721516 ccaaacgaccaccaaaagaaaggaaccgactttgcca 17721552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 166
Target Start/End: Complemental strand, 27218481 - 27218341
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||| ||| |||||||||||| ||||||||||||||| ||| ||||||||| | | ||  |||| ||||||||| ||||| |    
T  27218481 ttattaaacaaagattcaatgagagaaattatacctgacggagccttgaagaaggaaagtgcatagacatgaagcgaagtcaagacagacttaagaagaa 27218382  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccacccc 166  Q
    |||| ||||| ||  |||| || ||||||||||||||||||    
T  27218381 ccaagcgacccccgaaagatagaaaacgactttgccacccc 27218341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 29968755 - 29968912
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||||| |||| ||||| |||| |||||||||||||||||  || |||||||| ||||| ||||| |    
T  29968755 ttattaaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagagcatagacaggtagagcagtcaggacggactttagaagaa 29968854  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| || || ||  | |||||||| ||||||||||| ||   || ||||||||||||    
T  29968855 tcaaacggccaccgaaggaaaggaaccgactttgccaaccagccaatctagatttaat 29968912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 49 - 183
Target Start/End: Complemental strand, 45164883 - 45164749
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagg 148  Q
    ||||||| ||||||   ||||||||||||||| ||||||||||||||||| |||||||| ||||||||| | ||| | ||| ||||||||| | |||||     
T  45164883 agagattgtacctgctggagccttgaagaaggaaagagcatagacaggtagcgcggtcaagacagactttaaaagaatcaagcgacctccaaaggaaaga 45164784  T
Q  149 aaacgactttgccaccccaacagtctagatttaat 183  Q
    || ||||||||||| |   || |||||||||||||    
T  45164783 aaccgactttgccaactagacggtctagatttaat 45164749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 11276607 - 11276471
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||| |||||||||||||  || |||||||| ||||| || || |    
T  11276607 ttattaaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacggactttaggagaa 11276508  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgcca 162  Q
     ||| ||||| ||  |||||||||| | |||||||||    
T  11276507 tcaaacgaccaccgaaagaaaggaaccaactttgcca 11276471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 45993357 - 45993508
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| | |||||||| | ||||||||||||||||| |||| |||||||| | ||||||||||||||| |  | |||||  ||||| || ||||| |    
T  45993357 ttattaaataaagattcaagggtagagattatacctgacggagctttgaagaaagaaagagcatagacaggcagagaggtcaacacagatttgagaagaa 45993456  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctaga 177  Q
    |||| ||||| ||| |||| ||||||||||| | ||| ||  ||||||||||    
T  45993457 ccaaacgaccaccaaaagagaggaaacgactattccaacctgacagtctaga 45993508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 6335711 - 6335654
Alignment:
Q  66 gagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    ||||||||||||||| ||||||||||||||||||||| |||| ||||||||| |||||    
T  6335711 gagccttgaagaaggaaagagcatagacaggtaacgcagtcaagacagactttagaag 6335654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 23054318 - 23054257
Alignment:
Q  37 agattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggta 98  Q
    ||||||||||  ||||||||||||||||||||| || ||||||| ||| |||||||||||||    
T  23054318 agattcaatggaagagattatacctgacagagctttaaagaaggaaagtgcatagacaggta 23054257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 132
Target Start/End: Complemental strand, 41805091 - 41805012
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccg 132  Q
    ||||||||||||  ||||||||||||||  ||||||||||||||||  | ||||| ||||||||| ||||| || |||||    
T  41805091 attatacctgacgaagccttgaagaaggagagagcatagacaggtagagaggtcaagacagactttagaagaactaaccg 41805012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 19735299 - 19735369
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  |||||||||||||||  |||| || ||||||| |||||||||||||||    
T  19735299 ttattcaacaaagattcaatggaagagattatacctgatggagctttaaagaaggaaagagcatagacagg 19735369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 123
Target Start/End: Complemental strand, 25018634 - 25018564
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    ||||||||||||  |||||||||||||| |||| |||||| |||||| | ||||| ||||||||| |||||    
T  25018634 attatacctgacgaagccttgaagaaggaaagaacatagataggtaaagaggtcaagacagactttagaag 25018564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 18671952 - 18672021
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacag 95  Q
    |||||||| | ||||||||||  ||||||||||||||| | ||| |||||||||| |||| |||||||||    
T  18671952 ttattaaataaagattcaatggaagagattatacctgatatagctttgaagaaggaaagatcatagacag 18672021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 33820915 - 33820752
Alignment:
Q  29 ttaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggacca 128  Q
    ||||| ||| ||||||||  |||||| ||||||||  |||| |||||||||| |||| |||||| ||| |  | |||||||||||| || ||||| | ||    
T  33820915 ttaaaaataaattcaatggaagagataatacctgatggagctttgaagaaggaaagaacatagataggcagagaggtcaggacagaattgagaagaatca 33820816  T
Q  129 accgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaa 192  Q
    |||||||  || |||| || |||||  ||||||| | | ||| |||||| ||||| || |||||    
T  33820815 accgacccgcaaaagatagaaaacggttttgccatctcgacaatctagacttaatagtattcaa 33820752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 50 - 183
Target Start/End: Original strand, 13440863 - 13440996
Alignment:
Q  50 gagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaagga 149  Q
    |||||||||||||   |||| |||||||||| ||| ||||||||||| |  | ||||| |||| | || || || ||||| ||||| ||| |||| || |    
T  13440863 gagattatacctgctggagctttgaagaaggaaagcgcatagacaggcagagaggtcaagacatatttgagtagaaccaagcgaccaccacaagagagaa 13440962  T
Q  150 aacgactttgccaccccaacagtctagatttaat 183  Q
    | ||||| | ||| ||| ||||||||||||||||    
T  13440963 accgactattccaacccgacagtctagatttaat 13440996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 34104259 - 34104312
Alignment:
Q  27 tattaaacatagattcaatgatagagattatacctgacagagccttgaagaagg 80  Q
    ||||||| ||||||||||||||||| || |||| |||| |||| ||||||||||    
T  34104259 tattaaaaatagattcaatgatagaaatgatacttgacggagctttgaagaagg 34104312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 95
Target Start/End: Complemental strand, 19544762 - 19544694
Alignment:
Q  27 tattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacag 95  Q
    ||||||| ||||||| ||||||||| || ||||  | | |||| |||||||||| ||||||||||||||    
T  19544762 tattaaaaatagatttaatgatagaaatgatactcggcggagctttgaagaaggaaagagcatagacag 19544694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 41340330 - 41340398
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagaca 94  Q
    |||||||| | ||||||||||  ||||||||||||| ||  ||| |||||||||| ||| |||||||||    
T  41340330 ttattaaataaagattcaatggaagagattataccttacgaagctttgaagaaggaaagggcatagaca 41340398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 45871544 - 45871616
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggta 98  Q
    |||||||| |||||||||||   ||| || ||||||||  |||| |||||||||| ||||||||| |||||||    
T  45871544 ttattaaatatagattcaatagaagaaataatacctgaaggagctttgaagaaggaaagagcataaacaggta 45871616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 42514501 - 42514658
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||| | |||| |||||||||| ||| |||||||||||||  || |||||||||||||| ||||| |    
T  42514501 ttattaaacaaagattcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacagactttagaagaa 42514600  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||| ||||| ||||||||||| ||  ||| ||||||||||||    
T  42514601 tcaaacgaccaccgaaagataggaaccgactttgccaaccagacaatctagatttaat 42514658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 380682 - 380854
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| ||||||||||||||||| || ||||||||   ||| |||||||||| ||||||||||||| | |  | ||||| |||| |||| ||||| |    
T  380682 ttattaaaaatagattcaatgatagaaatgatacctgatgaagctttgaagaaggaaagagcatagacatgcagagaggtcaagacaaactttagaagaa 380781  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaattgttttcaacacagg 198  Q
    ||||||| || | | |||| || |||||||||||||||||| ||| |||||| ||||| | ||||||||||||    
T  380782 ccaaccggcccctaaaagagagaaaacgactttgccaccccgacaatctagacttaatggatttcaacacagg 380854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 26 - 162
Target Start/End: Complemental strand, 28535035 - 28534899
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||| |||||||||||||  || |||||||| ||||| ||||| |    
T  28535035 ttattaaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacggacttaagaagaa 28534936  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgcca 162  Q
     ||| ||||| ||| |||||||||| |||||||||||    
T  28534935 tcaaacgaccaccaaaagaaaggaaccgactttgcca 28534899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 26 - 181
Target Start/End: Original strand, 23239164 - 23239319
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||| |||||||||||||  || |||||||| ||||| ||||| |    
T  23239164 ttattaaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacggactttagaagaa 23239263  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagattta 181  Q
     | | ||||| ||  |||||||||| ||||||||||| ||  ||| ||||||||||    
T  23239264 tcgaacgaccaccgaaagaaaggaaccgactttgccaaccagacaatctagattta 23239319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 66 - 180
Target Start/End: Original strand, 36256596 - 36256710
Alignment:
Q  66 gagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacctccataagaaaggaaacgactttgccaccc 165  Q
    ||||||||||||||| ||||||||||||||||| |||||||| ||||||||| | ||| | ||| ||||||||| ||||||| || ||||||||||| |     
T  36256596 gagccttgaagaaggaaagagcatagacaggtagcgcggtcaagacagactttaaaagaatcaagcgacctccaaaagaaagaaaccgactttgccaact 36256695  T
Q  166 caacagtctagattt 180  Q
      |||||||||||||    
T  36256696 agacagtctagattt 36256710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 21084689 - 21084771
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgacc 135  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||  | ||||| ||||||||| |||||||| ||||||||    
T  21084689 attatacctgacggagccttgaagaaggaaagagcatagacaggtagagaggtcaagacagactttagaaggactaaccgacc 21084771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 26 - 184
Target Start/End: Original strand, 33170439 - 33170597
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    ||||| |||| ||||||||||  | |||||||||||||| |||| ||||| |||| |||||||||||||||||  || ||||||||| | || |||||||    
T  33170439 ttatttaacaaagattcaatggaatagattatacctgacggagctttgaaaaaggaaagagcatagacaggtagtgcagtcaggacaaatttgagaagga 33170538  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaatt 184  Q
     ||||||  | ||| |||||||||| ||||| ||||| ||  ||| ||||| |||||||    
T  33170539 tcaaccggtcaccaaaagaaaggaaccgactatgccaaccagacaatctagctttaatt 33170597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 22094608 - 22094451
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||| | ||||||||||  |||||||||||||||| |||| |||||||||| ||||||||||||||| || |  |||| |||||  || ||||| |    
T  22094608 ttattaaataaagattcaatggcagagattatacctgacggagctttgaagaaggaaagagcatagacaggcaaagaagtcaagacagctttgagaagaa 22094509  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
    ||||  | || ||| |||| ||||||||||| | ||| ||| ||||||||| ||||||    
T  22094508 ccaaatggccaccaaaagagaggaaacgactattccaacccgacagtctagctttaat 22094451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 30731673 - 30731516
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||| | |||| |||||||||| ||| |||||||||||||  || |||||||| ||||| || || |    
T  30731673 ttattaaacaaagattcaatggaagagattatacctgtcggagctttgaagaaggaaagtgcatagacaggtagagcagtcaggacggactttagtagaa 30731574  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
     ||| ||||| ||  |||| ||||| ||||||| ||| ||  ||| ||||||||||||    
T  30731573 tcaaacgaccaccgaaagataggaaccgacttttccaaccagacaatctagatttaat 30731516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 35983150 - 35983053
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    |||||||||| ||||||||||  | ||||||||||||||||||| ||||| |||| ||| |||||||||||||  || |||||||||||||| |||||    
T  35983150 ttattaaacaaagattcaatggaaaagattatacctgacagagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacagacttaagaag 35983053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 41590897 - 41590961
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    |||||||||||| ||||||||||||||| ||||| |||||||||||  | ||||| |||||||||    
T  41590897 attatacctgacggagccttgaagaaggaaagagtatagacaggtagagaggtcaagacagactt 41590961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 8299541 - 8299471
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    |||||||||| |||||||||   |||||||||||||||| |||| ||||| |||| ||| |||||||||||    
T  8299541 ttattaaacaaagattcaatagaagagattatacctgacggagctttgaaaaaggaaagtgcatagacagg 8299471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 27796265 - 27796335
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||| |||||||||||    
T  27796265 ttatttaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacagg 27796335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 35122047 - 35121977
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| ||||||||||  |||||||||||||||  |||| || ||||||| |||||||||||||||    
T  35122047 ttattcaacaaagattcaatggaagagattatacctgaaggagctttaaagaaggaaagagcatagacagg 35121977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 4297641 - 4297596
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggta 98  Q
    |||||||||||| ||| ||||||||||| |||||||||||||||||    
T  4297641 attatacctgacggagtcttgaagaaggaaagagcatagacaggta 4297596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 19506779 - 19506847
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagaca 94  Q
    ||||| |||| ||||||||||  |||||||||||||||  |||| || ||||||| |||||||||||||    
T  19506779 ttattcaacaaagattcaatggaagagattatacctgatggagctttaaagaaggaaagagcatagaca 19506847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 22437999 - 22438067
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagaca 94  Q
    ||||||||||||||||||||   |||||||||||||||  ||||  ||||||||| || ||||||||||    
T  22437999 ttattaaacatagattcaatataagagattatacctgagggagctatgaagaaggaaaaagcatagaca 22438067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 29572227 - 29572159
Alignment:
Q  28 attaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| || |||||||| |  ||||||||||| ||||||||| |||||||||| ||| |||||||||||    
T  29572227 attaagcaaagattcaaaggaagagattatacttgacagagctttgaagaaggaaagtgcatagacagg 29572159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 29573604 - 29573536
Alignment:
Q  28 attaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| || |||||||| |  ||||||||||| ||||||||| |||||||||| ||| |||||||||||    
T  29573604 attaagcaaagattcaaaggaagagattatacttgacagagctttgaagaaggaaagtgcatagacagg 29573536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 29574981 - 29574913
Alignment:
Q  28 attaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| || |||||||| |  ||||||||||| ||||||||| |||||||||| ||| |||||||||||    
T  29574981 attaagcaaagattcaaaggaagagattatacttgacagagctttgaagaaggaaagtgcatagacagg 29574913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 29576358 - 29576290
Alignment:
Q  28 attaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| || |||||||| |  ||||||||||| ||||||||| |||||||||| ||| |||||||||||    
T  29576358 attaagcaaagattcaaaggaagagattatacttgacagagctttgaagaaggaaagtgcatagacagg 29576290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 29577735 - 29577667
Alignment:
Q  28 attaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| || |||||||| |  ||||||||||| ||||||||| |||||||||| ||| |||||||||||    
T  29577735 attaagcaaagattcaaaggaagagattatacttgacagagctttgaagaaggaaagtgcatagacagg 29577667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 29579112 - 29579044
Alignment:
Q  28 attaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| || |||||||| |  ||||||||||| ||||||||| |||||||||| ||| |||||||||||    
T  29579112 attaagcaaagattcaaaggaagagattatacttgacagagctttgaagaaggaaagtgcatagacagg 29579044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 25856798 - 25856728
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    |||||||||| ||||| |||   |||||||||||||||| |||| ||||| |||| ||| |||||||||||    
T  25856798 ttattaaacaaagatttaatataagagattatacctgacggagctttgaaaaaggaaagtgcatagacagg 25856728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 95
Target Start/End: Complemental strand, 26261654 - 26261608
Alignment:
Q  49 agagattatacctgacagagccttgaagaaggtaagagcatagacag 95  Q
    |||||||||||||||  |||| |||||||||| ||||||||||||||    
T  26261654 agagattatacctgaaggagctttgaagaaggaaagagcatagacag 26261608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 30509382 - 30509312
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    |||||||||| ||| ||||||  ||||||||||||||   |||| || ||||||| |||||||||||||||    
T  30509382 ttattaaacaaagaatcaatggaagagattatacctgttggagctttaaagaaggaaagagcatagacagg 30509312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 30549725 - 30549655
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    |||||||||| ||| ||||||  ||||||||||||||   |||| || ||||||| |||||||||||||||    
T  30549725 ttattaaacaaagaatcaatggaagagattatacctgttggagctttaaagaaggaaagagcatagacagg 30549655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 117
Target Start/End: Original strand, 6050048 - 6050112
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    |||||||||||  |||| |||||||||| ||| ||||||||||| | || |||||| ||||||||    
T  6050048 attatacctgatggagctttgaagaaggaaagcgcatagacaggcagcgaggtcagaacagactt 6050112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 10780982 - 10781050
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagaca 94  Q
    ||||| |||| |||||||||   |||||||||||||||| |||| ||||| |||| ||| |||||||||    
T  10780982 ttatttaacaaagattcaatagaagagattatacctgacggagctttgaaaaaggaaagtgcatagaca 10781050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 10793231 - 10793279
Alignment:
Q  29 ttaaacatagattcaatgatagagattatacctgacagagccttgaaga 77  Q
    ||||| |||||||||| | ||||||| ||||||||| ||||||||||||    
T  10793231 ttaaagatagattcaaggttagagataatacctgacggagccttgaaga 10793279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 35 - 183
Target Start/End: Complemental strand, 63650 - 63502
Alignment:
Q  35 atagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaaggaccaaccgac 134  Q
    ||||||||||||  |||||||||||||||   |||||||||||||| ||||||||| ||||| | |  ||||| |||||| || |||||||||||||  |    
T  63650 atagattcaatggaagagattatacctgaagaagccttgaagaaggaaagagcataaacaggaagcaaggtcaagacagattttagaaggaccaaccagc 63551  T
Q  135 ctccataagaaaggaaacgactttgccaccccaacagtctagatttaat 183  Q
    | ||| |||| ||||| ||||| ||||||| | ||| ||||| ||||||    
T  63550 ccccaaaagataggaagcgactctgccaccacgacattctagttttaat 63502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 4033 - 4167
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaagga 125  Q
    |||||||||| ||||||||||  |||||||||||||||| |||| ||||| |||| ||| |||||||||||||  || |||||||| ||||| ||||| |    
T  4033 ttattaaacaaagattcaatggaagagattatacctgacggagctttgaaaaaggaaagtgcatagacaggtagagcagtcaggacggactttagaagaa 4132  T
Q  126 ccaaccgacctccataagaaaggaaacgactttgc 160  Q
     ||| ||||| ||  | |||||||| | |||||||    
T  4133 tcaaacgaccaccgaaggaaaggaaccaactttgc 4167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 123
Target Start/End: Original strand, 28582 - 28652
Alignment:
Q  53 attatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||  | ||||| ||||||||| |||||    
T  28582 attatacctgacggagccttgaagaaggaaagagcatagacaggtagagaggtcaagacagactttagaag 28652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 96
Target Start/End: Original strand, 6873 - 6942
Alignment:
Q  27 tattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||||| ||||||||||||| ||| || ||||||||| |||| ||||| |||| |||||||||||||||    
T  6873 tattaaaaatagattcaatgagagaaatgatacctgacggagctttgaaaaaggaaagagcatagacagg 6942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33993 - 33930
Alignment:
Q  1 atcctcactccctccccnnnnnnnnttattaaacatagattcaatgatagagattatacctgac 64  Q
    |||||||||||||||||        |||||||| ||||||||||||| ||||||||||||||||    
T  33993 atcctcactccctccccaaaaaaatttattaaaaatagattcaatgacagagattatacctgac 33930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1350 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1350
Description:

Target: scaffold1350; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 325 - 395
Alignment:
Q  26 ttattaaacatagattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacagg 96  Q
    ||||| |||| |||||||||   ||||||||||| |||| |||| ||||| |||| |||||||||||||||    
T  325 ttatttaacaaagattcaattgaagagattatacttgacggagctttgaaaaaggaaagagcatagacagg 395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 117
Target Start/End: Original strand, 8338 - 8404
Alignment:
Q  51 agattatacctgacagagccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagactt 117  Q
    |||||||||||||  |||| |||||||||| ||| ||||||||||| |  | |||||||||||||||    
T  8338 agattatacctgatggagctttgaagaaggaaagcgcatagacaggcagagaggtcaggacagactt 8404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 15009 - 14948
Alignment:
Q  37 agattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagacaggta 98  Q
    ||||||||||  ||||||||||||||   || | |||||||||| |||||||||||||||||    
T  15009 agattcaatggaagagattatacctggtggatctttgaagaaggaaagagcatagacaggta 14948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 94
Target Start/End: Original strand, 67872 - 67929
Alignment:
Q  37 agattcaatgatagagattatacctgacagagccttgaagaaggtaagagcatagaca 94  Q
    ||||||||||  ||||||||||||| ||||||| |||||||||| || | ||||||||    
T  67872 agattcaatggaagagattataccttacagagctttgaagaaggaaaaatcatagaca 67929  T

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Target: scaffold0061 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 55487 - 55543
Alignment:
Q  67 agccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    |||||||||||||| |||||||||||||||||  | ||||| || |||||| |||||    
T  55487 agccttgaagaaggaaagagcatagacaggtagagaggtcaagatagactttagaag 55543  T

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Target: scaffold0017 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 143146 - 143090
Alignment:
Q  67 agccttgaagaaggtaagagcatagacaggtaacgcggtcaggacagacttcagaag 123  Q
    |||||||||||||| |||||||||||||||||  | ||||| || |||||| |||||    
T  143146 agccttgaagaaggaaagagcatagacaggtagagaggtcaagatagactttagaag 143090  T

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