View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12219_low_2 (Length: 273)
Name: NF12219_low_2
Description: NF12219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12219_low_2 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 34750353 - 34750099
Alignment:
| Q |
19 |
ccattagccatggatgtcttagaatcaaccttcccaccgtcaagtggaacattccgatccgacataagagacggtgtgatggcaccaatgctcaaattct |
118 |
Q |
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| T |
34750353 |
ccattagccatggatgtcttagaatcaaccttcccaccgtcaagtggaacattccgatccgacataagagacagtgtgatggcaccaatgctcaaattct |
34750254 |
T |
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| Q |
119 |
taaacagaaccaattcatttttcttcattgatgcatacccatatttcccatggtcacaggaccccaacaatattcccctagactatgctctcttcagagg |
218 |
Q |
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| T |
34750253 |
taaacagaaccaattcatttttcttcattgatgcatacccatatttcccatggtcacaggaccccaacaatattcccctagactatgctctcttcagagg |
34750154 |
T |
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| Q |
219 |
agatttcaacacaagagaccctgatagtggcttaatctacagaaacttgttagac |
273 |
Q |
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| T |
34750153 |
agatttcaccacaagagaccctgatagtggcttaatctacagaaacttgttagac |
34750099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 26593697 - 26593444
Alignment:
| Q |
19 |
ccattagccatggatgtcttagaatcaaccttcccaccgtcaagtggaacattccgatccgacataagagacggtgtgatggcaccaatgctcaaattct |
118 |
Q |
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||||||||||||||||||||| ||| ||| || ||| ||||||| || ||||||| |||| ||| ||||||||||||||| ||||||||||||||||||| |
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| T |
26593697 |
ccattagccatggatgtcttacaattaacattaccaacgtcaagcgggacattccaatccaacaaaagagacggtgtgatagcaccaatgctcaaattct |
26593598 |
T |
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| Q |
119 |
taaacagaaccaattcatttttcttcattgatgcatacccatatttcccatggtcacaggaccc-caacaatattcccctagactatgctctcttcagag |
217 |
Q |
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| T |
26593597 |
ttgacatgaccaactcatttttctctattgatgcatacccatatttcccatggtcacaggaccctcaacagtattcccctagattttactctatttagga |
26593498 |
T |
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| Q |
218 |
gagatttcaacacaagagaccctgatagtggcttaatctacagaaacttgttagac |
273 |
Q |
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|||| || | ||||||||||| || || ||||||||||||| ||||||||||||| |
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| T |
26593497 |
gagactttaccacaagagaccttggta--ggcttaatctacataaacttgttagac |
26593444 |
T |
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