View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12220_high_2 (Length: 450)
Name: NF12220_high_2
Description: NF12220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12220_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 85 - 437
Target Start/End: Complemental strand, 29510300 - 29509948
Alignment:
| Q |
85 |
tctgacaactagtttggataaacatttcaatgaacacttggacaaattagtnnnnnnntagttgaaattataatgaatataagaataaggatgaatatga |
184 |
Q |
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| T |
29510300 |
tctgacaacaagtttggataaacatttcaatgaacacttggacaaattagtaaaaaaatagttgaaatcataatgaatataagaataaggatgaatatga |
29510201 |
T |
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| Q |
185 |
cattttgttaaactttctgcaaaataattgtcttgtgagtgatgctaaaaatacatgttcattgtggctatacgcacttcttgaattcgttggcttgatc |
284 |
Q |
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| T |
29510200 |
cattttgttaaactttctgcaaaataattgtcttgtgagtgatgctaaaaatacatgttcattgtggctatacgcacttcttgaatttgttggtttgatc |
29510101 |
T |
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| Q |
285 |
agttaaaatttcatcatttatatgtatttgctaactcactgcagtggcatggacatgataagttggtatttaacatgttggatattttgtgaatccgttg |
384 |
Q |
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| T |
29510100 |
agttaaaatttcatcatttatatgtatttgctaactgactgcagtggcatggacatgataagttggtatttaacatgttggatattttgtgaatccattg |
29510001 |
T |
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| Q |
385 |
tgtctaatggattagaaaagaataaacatattttcattgttgttcatgcttgt |
437 |
Q |
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| T |
29510000 |
tgtctaatgcattagaaaagaataaacatattttcattgttgttcatgcttgt |
29509948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 262 - 428
Target Start/End: Complemental strand, 29504708 - 29504546
Alignment:
| Q |
262 |
ttcttgaattcgttggcttgatcagttaaaatttcatcatttatatgtatttgctaactcactgcagtggcatggacatgataagttggtatttaacatg |
361 |
Q |
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| T |
29504708 |
ttcttgaatttgtttgcttgatcggttaaaatttcatcatttat--gtatttgctaactcactacag--gcatggacttgataagttagtatttaacatg |
29504613 |
T |
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| Q |
362 |
ttggatattttgtgaatccgttgtgtctaatggattagaaaagaataaacatattttcattgttgtt |
428 |
Q |
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| T |
29504612 |
ttggatattttgtgaatccattgtgtctaattcattagaaaataataaacctattttcattgttgtt |
29504546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 29510356 - 29510315
Alignment:
| Q |
16 |
agaggagagatagttgaaggtaaaagactgataaacattggg |
57 |
Q |
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| T |
29510356 |
agaggagagatagttgaaggtaaaagactgataaacattggg |
29510315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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