View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12220_high_3 (Length: 438)
Name: NF12220_high_3
Description: NF12220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12220_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Complemental strand, 12551033 - 12550619
Alignment:
| Q |
18 |
caaagaccaatccacctggcataagattcttgaaatttgtaacgcctcaacgagttcaatgaccttgaacggctgcaagagcacaccattaatgaagggt |
117 |
Q |
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| T |
12551033 |
caaagaccaatccacctggcataagattcttgaaatttgtaacgcctcaacgagttcaatgccctcgaacggctgcaagagcacaccattaatgaagggt |
12550934 |
T |
|
| Q |
118 |
gtcatatgtaacgttcctccctttacgcatcaacagctcctttctaggattgtataaataatccttctcacaacaatgcaaggtacacaatttctcaact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
12550933 |
gtcatatgtaacgttcctccctttacgcatcaacagctcctttctaggattgtataaatactctttctcacaacaatgcaaggtacacaatttctcaact |
12550834 |
T |
|
| Q |
218 |
cgtaaacctcacactctttggtcacttactatcttagacgtcagagtgctccaatccagataactttctcgatctatccagatcaataatgactttcttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12550833 |
cgtaaacctcacactctttggtcacttactatcttatacgtcagagtgctccaatccagataactttctcggtctatccagatcaataatgactttcttt |
12550734 |
T |
|
| Q |
318 |
catatcatagatcgacacgtgtgtgaccataattgttaccccaatttaaaaccttacttttcataattaaaatgagagattaccaagccatacgtacctt |
417 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12550733 |
catatcatagatcgacatgtgtgtgaccataattgttaccccaatttaaaaccttacttttcataattaaaatgagagattaccaagccatacgtacctt |
12550634 |
T |
|
| Q |
418 |
ctgcacaggttctgc |
432 |
Q |
| |
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||||| ||| ||||| |
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| T |
12550633 |
ctgcaaaggatctgc |
12550619 |
T |
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