View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12220_high_4 (Length: 309)
Name: NF12220_high_4
Description: NF12220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12220_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 10 - 291
Target Start/End: Complemental strand, 31222946 - 31222670
Alignment:
| Q |
10 |
gcacagacaaggtctaactttagtttggtatttttattacaagggttaattgaaagtcacaaaatgagtttatcttctccgataatgttcaatttgttga |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31222946 |
gcacaaacaaggtctaactttagtttggtatttttattacaagggttaattggaagtcacaaaatgagtttatcttctccgataatgttcaatttgttga |
31222847 |
T |
|
| Q |
110 |
ccaattgatagatcaaattcatttgttgtcttggaaatacatttttataatgttttactatctactcatttccttnnnnnnntgagtaggtagtaaaacc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||| | || || | | | |||| | ||| |||||||||||||||||| |
|
|
| T |
31222846 |
ccaattgatagatcaaattcatttgttgtcttggaagtacat-tttgggaggtctttaga-caattcatatacttttta---tgagtaggtagtaaaacc |
31222752 |
T |
|
| Q |
210 |
ttatttagttttttaaggaaatggaaaccttatttatattccactcttaattggtctttacatacattttcattgaatacat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31222751 |
ttatttagttttttaaggaaatggaaaccttatttatattccactcttaattggtctttacatacattttcatcgaatacat |
31222670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University