View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12220_high_6 (Length: 294)
Name: NF12220_high_6
Description: NF12220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12220_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 30517314 - 30517440
Alignment:
| Q |
6 |
agaagcagagattgtgcacgcaacgtaccaatgttggctcagtcattgccgagggttatcgagtggaagacaatgacatgagatggggttaattcttaaa |
105 |
Q |
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| T |
30517314 |
agaagaagagattgtgcacgcaacgtaccaatgttggctcagtcattgccgagggttatcgaggggaagacagtgacatgagatggggttcattcttaaa |
30517413 |
T |
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| Q |
106 |
aatggatagtaggctcaacaaataagc |
132 |
Q |
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| T |
30517414 |
aatggatagtaggctcaacaaataagc |
30517440 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 30517493 - 30517576
Alignment:
| Q |
185 |
agataggtttatgatctattgttgaattaaaatttaaacatatattttagttattacacatagaaaatgttatgtttctctaat |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
30517493 |
agataggtttatgatctattgttgaattaaaatttaaacatatattttagttattacacatagaaaatgttatgtttgtctaat |
30517576 |
T |
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