View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12220_low_10 (Length: 306)
Name: NF12220_low_10
Description: NF12220
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12220_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 9e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 51947463 - 51947330
Alignment:
| Q |
1 |
atgaaaatagaaaatgaaagaagggaaagtaagaaagaacctgaaaccctatattagaagaattgattgtcgttgttgctgaacccaacgtttcttccat |
100 |
Q |
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| T |
51947463 |
atgaaaatagaaaatgaaagaagggaaagtaagaaagaacctgaaaccctatattagaagaattgattgtcgttgttgctgaacccaacgtttcttccat |
51947364 |
T |
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| Q |
101 |
ggctatggtatgaattcgcacaaacttaatctgc |
134 |
Q |
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| T |
51947363 |
ggctatggtatgaattcgcacaaacttaatctgc |
51947330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 51947272 - 51947182
Alignment:
| Q |
197 |
cttgaagccttaaagagtaattgttgaacagaaacgaaactgaaaattgacagaattgatatgaaattggaagacatgagtgaatacagcgt |
288 |
Q |
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|||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
51947272 |
cttgaagccttaaa-agaaatcgttgaacagaaacgaaactgaaaattgacagaattgatatgaaattggaagacatgagtgactacagcgt |
51947182 |
T |
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