View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12221_high_1 (Length: 982)

Name: NF12221_high_1
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12221_high_1
NF12221_high_1
[»] chr4 (11 HSPs)
chr4 (233-963)||(27571844-27572589)
chr4 (12-160)||(27572703-27572851)
chr4 (245-372)||(22851306-22851433)
chr4 (233-371)||(30563537-30563675)
chr4 (235-300)||(25505205-25505270)
chr4 (238-370)||(9363321-9363453)
chr4 (268-372)||(36193432-36193534)
chr4 (182-223)||(27572641-27572682)
chr4 (318-372)||(12885049-12885103)
chr4 (102-157)||(9363169-9363224)
chr4 (19-84)||(27641387-27641452)
[»] chr1 (13 HSPs)
chr1 (233-378)||(3167295-3167438)
chr1 (233-370)||(4941612-4941749)
chr1 (233-378)||(21485969-21486114)
chr1 (236-372)||(8221749-8221883)
chr1 (246-362)||(40777901-40778016)
chr1 (233-367)||(13269350-13269483)
chr1 (233-305)||(46149932-46150004)
chr1 (320-372)||(51879047-51879099)
chr1 (248-363)||(23288544-23288659)
chr1 (246-299)||(24646944-24646997)
chr1 (255-363)||(45885831-45885935)
chr1 (102-157)||(4941848-4941903)
chr1 (320-365)||(23168271-23168316)
[»] chr7 (5 HSPs)
chr7 (233-372)||(7738872-7739010)
chr7 (235-303)||(2746777-2746845)
chr7 (252-343)||(35759228-35759319)
chr7 (236-305)||(24504451-24504520)
chr7 (316-379)||(30869130-30869193)
[»] chr6 (9 HSPs)
chr6 (235-372)||(24209288-24209425)
chr6 (238-353)||(2603861-2603974)
chr6 (255-371)||(24585077-24585192)
chr6 (246-375)||(3861009-3861138)
chr6 (316-372)||(15494246-15494302)
chr6 (102-157)||(3860844-3860899)
chr6 (320-369)||(13278817-13278866)
chr6 (321-368)||(32071914-32071961)
chr6 (321-368)||(32084265-32084312)
[»] chr8 (15 HSPs)
chr8 (233-372)||(28430094-28430234)
chr8 (233-372)||(17844983-17845125)
chr8 (233-368)||(1214184-1214319)
chr8 (236-302)||(5725904-5725970)
chr8 (235-372)||(12722313-12722449)
chr8 (315-372)||(23273822-23273879)
chr8 (320-375)||(24580033-24580088)
chr8 (233-299)||(13241205-13241271)
chr8 (316-372)||(12520550-12520606)
chr8 (102-157)||(1214418-1214473)
chr8 (320-368)||(30412836-30412884)
chr8 (255-302)||(25382358-25382405)
chr8 (118-157)||(29423351-29423390)
chr8 (318-372)||(33384600-33384654)
chr8 (315-360)||(28831498-28831543)
[»] chr3 (9 HSPs)
chr3 (235-372)||(52032894-52033030)
chr3 (271-372)||(29019635-29019735)
chr3 (233-300)||(26536389-26536456)
chr3 (235-304)||(26104527-26104596)
chr3 (315-376)||(53461793-53461854)
chr3 (316-368)||(21795457-21795509)
chr3 (320-372)||(33440712-33440764)
chr3 (316-372)||(47042665-47042721)
chr3 (245-300)||(53461720-53461775)
[»] chr2 (14 HSPs)
chr2 (233-376)||(37605963-37606106)
chr2 (231-300)||(20506600-20506669)
chr2 (235-366)||(39303362-39303491)
chr2 (245-303)||(21136415-21136473)
chr2 (233-362)||(36520964-36521091)
chr2 (233-372)||(36076296-36076436)
chr2 (245-372)||(11033196-11033322)
chr2 (233-300)||(13536885-13536952)
chr2 (320-372)||(6606258-6606310)
chr2 (233-303)||(8267385-8267455)
chr2 (247-372)||(20511689-20511812)
chr2 (320-372)||(13511161-13511213)
chr2 (239-303)||(4079338-4079402)
chr2 (102-157)||(20506762-20506818)
[»] chr5 (8 HSPs)
chr5 (240-348)||(41732334-41732442)
chr5 (320-372)||(43585682-43585734)
chr5 (318-372)||(19527959-19528013)
chr5 (316-372)||(17095626-17095682)
chr5 (233-303)||(28440751-28440818)
chr5 (233-284)||(37941308-37941359)
chr5 (319-372)||(3956134-3956187)
chr5 (235-288)||(39600947-39601000)
[»] scaffold0443 (1 HSPs)
scaffold0443 (233-304)||(7566-7637)


Alignment Details
Target: chr4 (Bit Score: 588; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 233 - 963
Target Start/End: Complemental strand, 27572589 - 27571844
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggc 332  Q
    |||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||        || |||||||||||||||    
T  27572589 agttaagttatcaaaatatctataatttatctgtcatataatataattataaccaaattaattttttagaggcattttttttcatccaaaattttgaggc 27572490  T
Q  333 ctaaagcccttgcttgggttgcttggcccttaggccggccatgcctcaaactattggcatatggaccgcatgtccctctaatcaagtccaccattattgt 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27572489 ctaaagcccttgcttgggttgcttggcccttaggccggccatgcctcaaactattggcatatggaccgcatgtccctctaatcaagtccaccattattgt 27572390  T
Q  433 agatgtgtatatcttagggagatgcctcacagttgagccttgaagtttatgtcaagttttcttttactactatttttacaatacttatcagtaaaaaact 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27572389 agatgtgtatatcttagggagatgcctcacagttgagccttgaagtttatgtcaagttttcttttactactatttttacaatacttatcagtaaaaaact 27572290  T
Q  533 ttagatttgaagcaatatttgcaatcaactgcaaataaatttcttgttnnnnnnnnttgcaaataaatttaccagagctagatggaaccagctaaattaa 632  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  27572289 ttagatttgaagcaatatttgcaatcaactgcaaataaatttcttgttaaaaaaaattgcaaataaatttaccagagctagatggaaccagctaaattaa 27572190  T
Q  633 ctgaaaattattattgaaaactcaatgatgttaaaagtaggaaaaatatattatagaagaatctagcaacaaaaggctaaa----------------tgt 716  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||    
T  27572189 ctgaaaattattattgaaaactcaatgatgttaaaagtaggaaaaatatattatagaagaatctagcaacaaaaggctaaatgtgtttcaggaaaactgt 27572090  T
Q  717 gttgtgtgttccatattgggatatgaaggacgtaaatttttaagatcatgaatcataacaatgtttggtgtcattgagagatgaaaaaagctgcaactgt 816  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27572089 gttgtgtgttccatattgggatatgaaggacgtaaatttttaagctcatgaatcataacaatgtttggtgtcattgagagatgaaaaaagctgcaactgt 27571990  T
Q  817 ttcaacaatatttggtgtcattaataatttaacattctcattcaggaaacattttgatttccgtaggaatgattgattaatacatggacggaacaataaa 916  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27571989 ttcaacaatatttggtgtcattaataatttaacattctcattcaggaaacattttgatttccgtaggaatgattgattaatacatggacggaacaat-aa 27571891  T
Q  917 aaaatcttcaacagnnnnnnnnnntggtttctatagtaattagcttc 963  Q
    ||||||||||||||          |||||||||||||||||||||||    
T  27571890 aaaatcttcaacagaaaaaaaaaatggtttctatagtaattagcttc 27571844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 27572851 - 27572703
Alignment:
Q  12 aacctgtgttccgagagaaacttaccatcggaaatttacttctgataaatggggggattttccagcaaaaatgtgggcagatagagcagtgggccggccc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27572851 aacctgtgttccgagagaaacttaccatcggaaatttacttctgataaatggggggattttccagcaaaaatgtgggcagatagagcagtgggccggccc 27572752  T
Q  112 aacaatttaagaggcataaaacaaaaattttaatgtggcctttaaatta 160  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27572751 aacaatttaagaggcataaaacaaaatttttaatgtggcctttaaatta 27572703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 245 - 372
Target Start/End: Original strand, 22851306 - 22851433
Alignment:
Q  245 caaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaagcccttg 344  Q
    ||||||||| |  ||||||| |||||| |||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||    
T  22851306 caaatgtctgttgtttatctatcatatgatatacttataaccaaattaattttttagaggcgttttttttcacccaaaattttgaggtctaaagcccttg 22851405  T
Q  345 cttgggttgcttggcccttaggccggcc 372  Q
    |||||||||||| |||||||||||||||    
T  22851406 cttgggttgcttagcccttaggccggcc 22851433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 233 - 371
Target Start/End: Complemental strand, 30563675 - 30563537
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggc 332  Q
    ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||         |   | ||||||||||||    
T  30563675 agttaagctatacaaatgtctacaatttatctgtcatataatatacttataaccaaattaattttttagaagccttttttttcttacgaaattttgaggc 30563576  T
Q  333 ctaaagcccttgcttgggttgcttggcccttaggccggc 371  Q
    ||||| ||||| |||||||||||||||||||||| ||||    
T  30563575 ctaaaacccttacttgggttgcttggcccttaggtcggc 30563537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 25505270 - 25505205
Alignment:
Q  235 ttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaatttttta 300  Q
    ||||| ||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  25505270 ttaagctatgcaaatgtctgtaatttatctgtcatataatatacctataaccaaattaatttttta 25505205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 238 - 370
Target Start/End: Original strand, 9363321 - 9363453
Alignment:
Q  238 agttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaa 337  Q
    |||||| ||||||  | ||||||||||||| ||||||||||||||||||||||||||||| |||||||         |||| ||  |||||| || ||||    
T  9363321 agttatgcaaatgcttgtaatttatctgtcgtataatatacttataaccaaattaattttatagaggccttttttttcaccaaattttttgaagcataaa 9363420  T
Q  338 gcccttgcttgggttgcttggcccttaggccgg 370  Q
    ||||||| |||||||||||| || |||||||||    
T  9363421 gcccttgtttgggttgcttgaccgttaggccgg 9363453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 268 - 372
Target Start/End: Original strand, 36193432 - 36193534
Alignment:
Q  268 atataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggc 367  Q
    ||||||||||||||||||||||||||||||||||||||          | ||||||| ||||| | |||| |||||||||| ||||||||||||||||||    
T  36193432 atataatatacttataaccaaattaattttttagaggc--ttttttttatccaaaatattgagacttaaaacccttgcttgagttgcttggcccttaggc 36193529  T
Q  368 cggcc 372  Q
    |||||    
T  36193530 cggcc 36193534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Complemental strand, 27572682 - 27572641
Alignment:
Q  182 gaaagatctaacatattatttatataatatcaatttttcgga 223  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  27572682 gaaagatctaacatattatttatataatatcaatttttcgga 27572641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 372
Target Start/End: Complemental strand, 12885103 - 12885049
Alignment:
Q  318 ccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    |||||||||||||||||||| |||||| |||||||||||| ||||||| ||||||    
T  12885103 ccaaaattttgaggcctaaaacccttgtttgggttgcttgacccttagaccggcc 12885049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 9363169 - 9363224
Alignment:
Q  102 gggccggcccaacaatttaagaggcataaaacaaaaattttaatgtggcctttaaa 157  Q
    |||||| |||||||  ||||||||| ||||||||||||||||||||||| ||||||    
T  9363169 gggccgacccaacagattaagaggcttaaaacaaaaattttaatgtggcttttaaa 9363224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 27641387 - 27641452
Alignment:
Q  19 gttccgagagaaacttaccatcggaaatttacttctgataaatggggggattttccagcaaaaatg 84  Q
    |||||||||| |||| |||||||||| || | ||| ||||||||||||| |||||| |||||||||    
T  27641387 gttccgagagtaactcaccatcggaacttaaattccgataaatggggggcttttcctgcaaaaatg 27641452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 5e-34; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 233 - 378
Target Start/End: Complemental strand, 3167438 - 3167295
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggc 332  Q
    ||||||| ||| ||||| | ||||||||||||||| |||||||||||||||||||||||||||||||||||||         |||||||||  ||||| |    
T  3167438 agttaagctatgcaaatatatataatttatctgtcttataatatacttataaccaaattaattttttagaggccttttttgtcacccaaaa--ttgagtc 3167341  T
Q  333 ctaaagcccttgcttgggttgcttggcccttaggccggccatgcct 378  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||    
T  3167340 ctaaaacccttgcttgggttgcttggcccttaggccggccctgcct 3167295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 233 - 370
Target Start/End: Complemental strand, 4941749 - 4941612
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggc 332  Q
    ||||||| ||| ||||| |||||||||||| |||||||||||||| |||| ||||||||||||||||||||||         ||||||||||||||||||    
T  4941749 agttaagctattcaaatatctataatttatttgtcatataatataattatgaccaaattaattttttagaggccttttttttcacccaaaattttgaggc 4941650  T
Q  333 ctaaagcccttgcttgggttgcttggcccttaggccgg 370  Q
    ||||| |||||| |||||||||||||||||||| ||||    
T  4941649 ctaaaacccttgtttgggttgcttggcccttagaccgg 4941612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 233 - 378
Target Start/End: Original strand, 21485969 - 21486114
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggc 332  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||| | ||||||||||||||||||||||||||         | ||||||||||||||||    
T  21485969 agttaagttatgcaaatgtctataatttatctatcacataatatccgtataaccaaattaattttttagaggcctttttttccgcccaaaattttgaggc 21486068  T
Q  333 ctaaagcccttgcttgggttgcttggcccttaggccggccatgcct 378  Q
    ||||||||||| |||| |||||||| ||||||| |||||| |||||    
T  21486069 ctaaagcccttacttgagttgcttgacccttagaccggccctgcct 21486114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 236 - 372
Target Start/End: Original strand, 8221749 - 8221883
Alignment:
Q  236 taagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggccta 335  Q
    |||||| | ||||||||| || ||||||||||||||||||||||||||||||||||||||||  |||||          |||| ||||||||||||||||    
T  8221749 taagttgtgcaaatgtctgtactttatctgtcatataatatacttataaccaaattaatttt--agaggttttgtttttcacctaaaattttgaggccta 8221846  T
Q  336 aagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    |||| ||||||||||||||||||||||||||||||||    
T  8221847 aagcacttgcttgggttgcttggcccttaggccggcc 8221883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 246 - 362
Target Start/End: Complemental strand, 40778016 - 40777901
Alignment:
Q  246 aaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaagcccttgc 345  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||         |||| ||||||||| |||||||||| |||||    
T  40778016 aaatatctataatttatctgtcatataatatacttataaccaaattaaatttttagaggc-ctttttttcacctaaaattttgtggcctaaagctcttgc 40777918  T
Q  346 ttgggttgcttggccct 362  Q
    |||||||||||||||||    
T  40777917 ttgggttgcttggccct 40777901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 233 - 367
Target Start/End: Original strand, 13269350 - 13269483
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggc 332  Q
    ||||||| ||| ||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||| |        |||||||||||||||| |    
T  13269350 agttaagatatacaaatatatgtaatttatctgtcatataatatacttacaaccaaattaattttttagagg-actttttttcacccaaaattttgagac 13269448  T
Q  333 ctaaagcccttgcttgggttgcttggcccttaggc 367  Q
     ||||| ||| |||| |||| ||||||||||||||    
T  13269449 ataaagtcctcgcttaggtttcttggcccttaggc 13269483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 46150004 - 46149932
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggc 305  Q
    ||||||||||| ||||||||  |||||||| ||| |||||||||| |||||||||||||||||||||||||||    
T  46150004 agttaagttatgcaaatgtcagtaatttatttgttatataatatatttataaccaaattaattttttagaggc 46149932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 51879099 - 51879047
Alignment:
Q  320 aaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  51879099 aaaattttgaggcctaaagcccttgcttgggtggcttggcccttaggccggcc 51879047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 248 - 363
Target Start/End: Complemental strand, 23288659 - 23288544
Alignment:
Q  248 atgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaagcccttgctt 347  Q
    |||||| |||||||||| |||||||||||| ||||||  |||||||||||||||||||           |||| |||||||||||||||||| |||||||    
T  23288659 atgtctgtaatttatctatcatataatatatttataattaaattaattttttagaggccttttttcttgcccataattttgaggcctaaagctcttgctt 23288560  T
Q  348 gggttgcttggccctt 363  Q
     |||||||| ||||||    
T  23288559 aggttgcttagccctt 23288544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 246 - 299
Target Start/End: Original strand, 24646944 - 24646997
Alignment:
Q  246 aaatgtctataatttatctgtcatataatatacttataaccaaattaatttttt 299  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||    
T  24646944 aaatgtctataatttatttgtcatattatatatttataaccaaatcaatttttt 24646997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 255 - 363
Target Start/End: Complemental strand, 45885935 - 45885831
Alignment:
Q  255 taatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaagcccttgcttgggttgc 354  Q
    |||||||| |||||||||||||| |||||| ||||||||||||||| || |          |||||||||||||||||||||| ||||| |||| |||||    
T  45885935 taatttatttgtcatataatatatttataagcaaattaattttttaaagac----ttttttacccaaaattttgaggcctaaaacccttacttgagttgc 45885840  T
Q  355 ttggccctt 363  Q
    ||| |||||    
T  45885839 ttgtccctt 45885831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 4941903 - 4941848
Alignment:
Q  102 gggccggcccaacaatttaagaggcataaaacaaaaattttaatgtggcctttaaa 157  Q
    |||||| |||||||  ||||||||| |||| |||||||||||||||||| ||||||    
T  4941903 gggccgtcccaacagattaagaggcctaaagcaaaaattttaatgtggcttttaaa 4941848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 320 - 365
Target Start/End: Complemental strand, 23168316 - 23168271
Alignment:
Q  320 aaaattttgaggcctaaagcccttgcttgggttgcttggcccttag 365  Q
    ||||| |||||||||||||| ||||||||||| |||||||| ||||    
T  23168316 aaaatcttgaggcctaaagctcttgcttgggtggcttggcctttag 23168271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 3e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 233 - 372
Target Start/End: Original strand, 7738872 - 7739010
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggc 332  Q
    ||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||         ||||||||||||||||||    
T  7738872 agttaagctatgcaaatgtctgtaatttatctgtcatataatatatttataaccaaattgattttttagaggc-ttttttttcacccaaaattttgaggc 7738970  T
Q  333 ctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
     |||||||||||||| | |||||||||||||||| |||||    
T  7738971 ttaaagcccttgctttgattgcttggcccttaggtcggcc 7739010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 235 - 303
Target Start/End: Original strand, 2746777 - 2746845
Alignment:
Q  235 ttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagag 303  Q
    ||||||||| |||||  |||| |||||||| |||||||||||||||||||| |||||||||||||||||    
T  2746777 ttaagttatgcaaatacctatgatttatctatcatataatatacttataacaaaattaattttttagag 2746845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 35759228 - 35759319
Alignment:
Q  252 ctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaagccctt 343  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||| || |         ||||||||||||||||| |||||||||||    
T  35759228 ctataatttatctatcatataatatacttataactaaattaattttttaaagacctatttttccacccaaaattttgaggtctaaagccctt 35759319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 236 - 305
Target Start/End: Original strand, 24504451 - 24504520
Alignment:
Q  236 taagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggc 305  Q
    |||||||| ||||  ||||||| |||| ||||||||||||||||||||||||||||| ||| ||||||||    
T  24504451 taagttatgcaaacatctataacttatttgtcatataatatacttataaccaaattagtttgttagaggc 24504520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 316 - 379
Target Start/End: Original strand, 30869130 - 30869193
Alignment:
Q  316 acccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggccatgcctc 379  Q
    ||||||||| ||||||| |||||||||||||| ||| ||||| |||||| ||||||| ||||||    
T  30869130 acccaaaatcttgaggcataaagcccttgctttggtggcttgacccttaagccggccctgcctc 30869193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 235 - 372
Target Start/End: Original strand, 24209288 - 24209425
Alignment:
Q  235 ttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcct 334  Q
    ||||||||| ||||||  | |||||||||| | |||||||||||||||||||||||||||||||||||||          |  |||||||||||||||||    
T  24209288 ttaagttatgcaaatgcatgtaatttatctatgatataatatacttataaccaaattaattttttagaggtcttttttttcgtccaaaattttgaggcct 24209387  T
Q  335 aaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    | |||||||||||||||||||||||||||| |||||||    
T  24209388 atagcccttgcttgggttgcttggcccttaagccggcc 24209425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 2603861 - 2603974
Alignment:
Q  238 agttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaa 337  Q
    |||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||          |||||||||||||||||| ||||    
T  2603861 agttatacaaatgtctgtaatttatctgttatataatatacttataaccaaattaattatttagagg--tcttttttcacccaaaattttgaggcttaaa 2603958  T
Q  338 gcccttgcttgggttg 353  Q
    ||||||||||||||||    
T  2603959 gcccttgcttgggttg 2603974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 255 - 371
Target Start/End: Complemental strand, 24585192 - 24585077
Alignment:
Q  255 taatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaagcccttgcttgggttgc 354  Q
    |||||||||| |||||||||||||||||||| | ||||||||||||||||||        ||||||||||||| ||||||||| ||  ||||||| ||||    
T  24585192 taatttatctctcatataatatacttataactagattaattttttagaggca-tttttttcacccaaaattttaaggcctaaaacctctgcttggattgc 24585094  T
Q  355 ttggcccttaggccggc 371  Q
    ||||||||||| |||||    
T  24585093 ttggcccttagaccggc 24585077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 246 - 375
Target Start/End: Original strand, 3861009 - 3861138
Alignment:
Q  246 aaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaagcccttgc 345  Q
    |||| ||| |||||||| |||||||||||||| ||||||| |||||||||||||| ||            | ||||||||||||  |||||| ||||||     
T  3861009 aaatatctgtaatttatatgtcatataatataattataactaaattaattttttatagttttttttttttagccaaaattttgaaacctaaaacccttgt 3861108  T
Q  346 ttgggttgcttggcccttaggccggccatg 375  Q
    ||||||||||||||||||||||||||||||    
T  3861109 ttgggttgcttggcccttaggccggccatg 3861138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 15494302 - 15494246
Alignment:
Q  316 acccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    ||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||    
T  15494302 acccaaaatcttgaggcctaaagccctcgctttggtggcttggcccttaggccggcc 15494246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 3860844 - 3860899
Alignment:
Q  102 gggccggcccaacaatttaagaggcataaaacaaaaattttaatgtggcctttaaa 157  Q
    ||||||| ||||||  ||||||||| |||||||||||||||||||||| |||||||    
T  3860844 gggccggtccaacagattaagaggcttaaaacaaaaattttaatgtggtctttaaa 3860899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 369
Target Start/End: Original strand, 13278817 - 13278866
Alignment:
Q  320 aaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccg 369  Q
    ||||| |||||||||||||||||||||| | | |||||||||||||||||    
T  13278817 aaaatcttgaggcctaaagcccttgctttgatagcttggcccttaggccg 13278866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 32071961 - 32071914
Alignment:
Q  321 aaattttgaggcctaaagcccttgcttgggttgcttggcccttaggcc 368  Q
    |||||||||||||| ||||||||||||| || ||||||||||| ||||    
T  32071961 aaattttgaggccttaagcccttgcttgagtggcttggcccttgggcc 32071914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 321 - 368
Target Start/End: Complemental strand, 32084312 - 32084265
Alignment:
Q  321 aaattttgaggcctaaagcccttgcttgggttgcttggcccttaggcc 368  Q
    |||||||||||||| ||||||||||||| || ||||||||||| ||||    
T  32084312 aaattttgaggccttaagcccttgcttgagtggcttggcccttgggcc 32084265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 5e-28; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 233 - 372
Target Start/End: Original strand, 28430094 - 28430234
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnn-cacccaaaattttgagg 331  Q
    |||||||||||  ||||||||  ||||||||| ||||||| |||| |||||||||||||||||||||| ||||          || ||||||||||||||    
T  28430094 agttaagttatgtaaatgtcttaaatttatctatcatatattatatttataaccaaattaattttttaaaggcttttttttttcatccaaaattttgagg 28430193  T
Q  332 cctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  28430194 cctaaagcccttgcttgggttgcttggcccttaggtcggcc 28430234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 233 - 372
Target Start/End: Original strand, 17844983 - 17845125
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagag---gcannnnnnnncacccaaaattttga 329  Q
    ||||||| ||| |||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||              || ||||||||||||    
T  17844983 agttaagctatgcaaatgtcttaaatttatctgttatataatatacttataaccaaattaattttttagagatttttttttttttcatccaaaattttga 17845082  T
Q  330 ggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    |||||| | ||||||||||||||||||||||||||| ||||||    
T  17845083 ggcctataacccttgcttgggttgcttggcccttagaccggcc 17845125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 233 - 368
Target Start/End: Complemental strand, 1214319 - 1214184
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggc 332  Q
    ||||||| ||| ||||||||| |||||||| |||||||||||||||||||||   ||||||||||||||||||         ||| ||||||||||||||    
T  1214319 agttaagctatgcaaatgtctgtaatttatttgtcatataatatacttataaattaattaattttttagaggccttttttttcactcaaaattttgaggc 1214220  T
Q  333 ctaaagcccttgcttgggttgcttggcccttaggcc 368  Q
    ||||| || |||||||  || |||||||||||||||    
T  1214219 ctaaaacctttgcttgaattacttggcccttaggcc 1214184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 236 - 302
Target Start/End: Original strand, 5725904 - 5725970
Alignment:
Q  236 taagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttaga 302  Q
    |||||||| |||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||    
T  5725904 taagttatgcaaatgtctataatttatctatcatataatatatttataatcaaattaattttttaga 5725970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 235 - 372
Target Start/End: Complemental strand, 12722449 - 12722313
Alignment:
Q  235 ttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcct 334  Q
    ||||| ||| ||||||||||||||| |||| |||||||||||| |||||| ||||||||||||||| || |         || |||||||||||||||||    
T  12722449 ttaagctatgcaaatgtctataattcatctatcatataatatatttataatcaaattaattttttaaagac-ctttttttcatccaaaattttgaggcct 12722351  T
Q  335 aaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    |||| | ||||||| |||  ||||||||||| ||||||    
T  12722350 aaagtctttgcttgagttatttggcccttagaccggcc 12722313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 23273822 - 23273879
Alignment:
Q  315 cacccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||    
T  23273822 cacccaaaattttgaggcctaaaacccttgtttgggttgcttggcccttaggacggcc 23273879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 24580033 - 24580088
Alignment:
Q  320 aaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggccatg 375  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||    
T  24580033 aaaattttgaggactaaagcccttgcttgggtggcttggcccttaggctggccatg 24580088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 13241205 - 13241271
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaatttttt 299  Q
    ||||||| ||| ||||||||| |||||||||| |||||||||||||| ||||||||||||| |||||    
T  13241205 agttaagctatgcaaatgtctgtaatttatctatcatataatatactcataaccaaattaaattttt 13241271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 12520550 - 12520606
Alignment:
Q  316 acccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    ||||||||| |||||||||||| ||||||||||||| | ||||||||||||||||||    
T  12520550 acccaaaatcttgaggcctaaaacccttgcttgggtggtttggcccttaggccggcc 12520606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 1214473 - 1214418
Alignment:
Q  102 gggccggcccaacaatttaagaggcataaaacaaaaattttaatgtggcctttaaa 157  Q
    ||||||||||||||| |||||| || |||| |||||| ||||||||||||||||||    
T  1214473 gggccggcccaacaaattaagatgcctaaagcaaaaaatttaatgtggcctttaaa 1214418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 30412884 - 30412836
Alignment:
Q  320 aaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggcc 368  Q
    ||||| ||||||| |||||||||| ||||||||||||| ||||||||||    
T  30412884 aaaatcttgaggcataaagccctttcttgggttgcttgacccttaggcc 30412836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 25382358 - 25382405
Alignment:
Q  255 taatttatctgtcatataatatacttataaccaaattaattttttaga 302  Q
    |||||||| ||| || |||||||||||||||||||||||| |||||||    
T  25382358 taatttatttgttatgtaatatacttataaccaaattaatgttttaga 25382405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 29423351 - 29423390
Alignment:
Q  118 ttaagaggcataaaacaaaaattttaatgtggcctttaaa 157  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  29423351 ttaagaggcctaaaacaaaaattttaatgcggcctttaaa 29423390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 318 - 372
Target Start/End: Complemental strand, 33384654 - 33384600
Alignment:
Q  318 ccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    ||||||| |||||||||||| |||  |||| ||| ||||||||||||||||||||    
T  33384654 ccaaaatcttgaggcctaaaacccccgctttggtggcttggcccttaggccggcc 33384600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 28831543 - 28831498
Alignment:
Q  315 cacccaaaattttgaggcctaaagcccttgcttgggttgcttggcc 360  Q
    ||||||||||||||| |||||||  |||||||||||| ||||||||    
T  28831543 cacccaaaattttgatgcctaaaatccttgcttgggtcgcttggcc 28831498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 3e-26; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 235 - 372
Target Start/End: Original strand, 52032894 - 52033030
Alignment:
Q  235 ttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcct 334  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| |||||         || |||||||| || |||||    
T  52032894 ttaagctatgcaaatgtctataatttatatgtcatataatatacttataacaaaattaattctttcgaggc-ctttttttcatccaaaattgtgtggcct 52032992  T
Q  335 aaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    ||| ||||||||||||||||||||||||||| ||||||    
T  52032993 aaaacccttgcttgggttgcttggcccttagaccggcc 52033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 271 - 372
Target Start/End: Complemental strand, 29019735 - 29019635
Alignment:
Q  271 taatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccgg 370  Q
    ||||||| ||||||||||||||||||||||||||||        ||||||||||||||||||||||| |||||||||  ||||||||| ||||| |||||    
T  29019735 taatatatttataaccaaattaattttttagaggcactttttt-cacccaaaattttgaggcctaaaacccttgcttaagttgcttggtccttaagccgg 29019637  T
Q  371 cc 372  Q
    ||    
T  29019636 cc 29019635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 26536456 - 26536389
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaatttttta 300  Q
    ||||||| ||| | |||||||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  26536456 agttaagctatacgaatgtctatagtttatctgtaagataatatacttataaccaaattaatttttta 26536389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 235 - 304
Target Start/End: Original strand, 26104527 - 26104596
Alignment:
Q  235 ttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagagg 304  Q
    ||||| ||| |||| |||| |||||||| |||||||||||||| ||||||| ||||||||||||||||||    
T  26104527 ttaagctatgcaaacgtctctaatttatttgtcatataatataattataactaaattaattttttagagg 26104596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 315 - 376
Target Start/End: Original strand, 53461793 - 53461854
Alignment:
Q  315 cacccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggccatgc 376  Q
    ||||||||||||||||||||||| ||||||  | ||||||||||||||||||||||| ||||    
T  53461793 cacccaaaattttgaggcctaaaacccttgtgtaggttgcttggcccttaggccggctatgc 53461854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 21795509 - 21795457
Alignment:
Q  316 acccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggcc 368  Q
    ||||||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  21795509 acccaaaatcttgaggcctaaagcccttgcttggatggcttggcccttaggcc 21795457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 33440712 - 33440764
Alignment:
Q  320 aaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  33440712 aaaaatttgaggcctaaagcccttgcttgggtggcttggcccttgggctggcc 33440764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 47042721 - 47042665
Alignment:
Q  316 acccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    ||||||||| |||| |||||||||| ||| |||||| ||||||||||||||||||||    
T  47042721 acccaaaatcttgatgcctaaagccattgtttgggtggcttggcccttaggccggcc 47042665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 245 - 300
Target Start/End: Original strand, 53461720 - 53461775
Alignment:
Q  245 caaatgtctataatttatctgtcatataatatacttataaccaaattaatttttta 300  Q
    ||||| ||| |||||||| |||||||||||||| ||||||||||||| ||||||||    
T  53461720 caaatatctgtaatttatttgtcatataatatatttataaccaaatttatttttta 53461775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 233 - 376
Target Start/End: Original strand, 37605963 - 37606106
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggc 332  Q
    ||||||| ||| ||||||  | ||||||||||||||||||| ||||||||||| |||||||||||||||||||         |||||||||||||||| |    
T  37605963 agttaagctatgcaaatgcttgtaatttatctgtcatataacatacttataactaaattaattttttagaggcctttgttttcacccaaaattttgagac 37606062  T
Q  333 ctaaagcccttgcttgggttgcttggcccttaggccggccatgc 376  Q
    ||||  |||||| ||||||||||||||| ||| ||| |||||||    
T  37606063 ctaagacccttgtttgggttgcttggcctttatgcctgccatgc 37606106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 20506669 - 20506600
Alignment:
Q  231 taagttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaatttttta 300  Q
    ||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  20506669 taagttaagttatacaaatgtctgtaatttatctgtcacataatatacttataaccaaattaatttttta 20506600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 235 - 366
Target Start/End: Complemental strand, 39303491 - 39303362
Alignment:
Q  235 ttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcct 334  Q
    |||| |||| ||||||| | |||||||||||| |||||||||| |||||||||||||||||||||||||||         ||||||||||||||| | ||    
T  39303491 ttaatttatgcaaatgtgtgtaatttatctgttatataatatatttataaccaaattaattttttagaggccttttttgccacccaaaattttgaagtct 39303392  T
Q  335 aaagcccttgcttgggttgcttggcccttagg 366  Q
    ||||||||| |  |||||||||||||||||||    
T  39303391 aaagcccttac--gggttgcttggcccttagg 39303362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 245 - 303
Target Start/End: Original strand, 21136415 - 21136473
Alignment:
Q  245 caaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagag 303  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21136415 caaatgtctataatttatctgtcatataatattcttataaccaaattaattttttagag 21136473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 233 - 362
Target Start/End: Original strand, 36520964 - 36521091
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggc 332  Q
    ||||||||||| ||||| ||| |||||||| |||||||||||||| |||||||| |||||||||||||| || |        || |||||||||||||||    
T  36520964 agttaagttatgcaaatatctgtaatttat-tgtcatataatataattataacccaattaattttttag-gggaattttttccatccaaaattttgaggc 36521061  T
Q  333 ctaaagcccttgcttgggttgcttggccct 362  Q
     |||||| ||||||||||||||||||||||    
T  36521062 ttaaagcacttgcttgggttgcttggccct 36521091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 233 - 372
Target Start/End: Complemental strand, 36076436 - 36076296
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagagg-cannnnnnnncacccaaaattttgagg 331  Q
    ||||||||||| ||||||||| || ||||||| ||||| | |||| ||||||||||||||| |||||||||| |         ||| |||||||||| ||    
T  36076436 agttaagttatgcaaatgtctgtagtttatctatcatacactatatttataaccaaattaaatttttagaggccttttttattcactcaaaattttgtgg 36076337  T
Q  332 cctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    |||||| ||||||||||||||||||||| ||||| ||||||    
T  36076336 cctaaaacccttgcttgggttgcttggctcttagaccggcc 36076296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 245 - 372
Target Start/End: Original strand, 11033196 - 11033322
Alignment:
Q  245 caaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaagcccttg 344  Q
    ||||||||| || ||||||| ||||||||||||||||||||||||||||||||||| || |         |||  |||||||||||||||||| ||||||    
T  11033196 caaatgtctgtagtttatctatcatataatatacttataaccaaattaattttttaaagac-ctttttttcacataaaattttgaggcctaaaacccttg 11033294  T
Q  345 cttgggttgcttggcccttaggccggcc 372  Q
    ||||| ||||||| |||||| |||||||    
T  11033295 cttggattgcttgacccttaagccggcc 11033322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 233 - 300
Target Start/End: Complemental strand, 13536952 - 13536885
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaatttttta 300  Q
    ||||||| ||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  13536952 agttaagctattcaaatgtctgtaatttatctgtcatataatatacttatgaccaaattaatttttta 13536885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 6606310 - 6606258
Alignment:
Q  320 aaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  6606310 aaaattttgaggcctaaagcccttgcttgggtggcttggcccttaggccggcc 6606258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 8267455 - 8267385
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagag 303  Q
    ||||||| ||| |||||||||  ||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  8267455 agttaagctatgcaaatgtctggaatttatctctcatataatatacttataatcaaattaattttttagag 8267385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 247 - 372
Target Start/End: Complemental strand, 20511812 - 20511689
Alignment:
Q  247 aatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaagcccttgct 346  Q
    ||||||| |||||| ||||||| |||||||| ||||||||||||||| |||||||| ||          | ||||||||||||| ||||||||||||| |    
T  20511812 aatgtctgtaatttttctgtcagataatatatttataaccaaattaaatttttagatgc--ctttttttatccaaaattttgagacctaaagcccttgtt 20511715  T
Q  347 tgggttgcttggcccttaggccggcc 372  Q
    ||||||| ||| |||||||| |||||    
T  20511714 tgggttgtttgacccttagggcggcc 20511689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 13511161 - 13511213
Alignment:
Q  320 aaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  13511161 aaaattttgaggcctaaagcccttgcttgggtggcttgacccttaggtcggcc 13511213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 239 - 303
Target Start/End: Original strand, 4079338 - 4079402
Alignment:
Q  239 gttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagag 303  Q
    ||||| ||||||| |||||||| |||||||||||||||| ||||||| ||| |||||||| ||||    
T  4079338 gttatacaaatgtttataatttttctgtcatataatatatttataacaaaaataatttttaagag 4079402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 157
Target Start/End: Complemental strand, 20506818 - 20506762
Alignment:
Q  102 gggccggcccaaca-atttaagaggcataaaacaaaaattttaatgtggcctttaaa 157  Q
    |||||| ||||||| | |||||||||||||| |||||||||||||||| ||||||||    
T  20506818 gggccgacccaacagaattaagaggcataaagcaaaaattttaatgtgacctttaaa 20506762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 3e-23; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 240 - 348
Target Start/End: Original strand, 41732334 - 41732442
Alignment:
Q  240 ttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagaggcannnnnnnncacccaaaattttgaggcctaaagc 339  Q
    |||| ||||||||| |||||||||| |||||||||||||||||||||| ||||| |||||||||||         |||||| ||||||||||||||||||    
T  41732334 ttatgcaaatgtctgtaatttatctatcatataatatacttataaccatattaaatttttagaggccttttttttcacccataattttgaggcctaaagc 41732433  T
Q  340 ccttgcttg 348  Q
    |||||||||    
T  41732434 ccttgcttg 41732442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 43585682 - 43585734
Alignment:
Q  320 aaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  43585682 aaaattttgaggcctaaagcccttgcttgggtggcttggcccttaggccggcc 43585734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 372
Target Start/End: Complemental strand, 19528013 - 19527959
Alignment:
Q  318 ccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    ||||||||||||||||||||| | ||| |||||||||||||| ||||||||||||    
T  19528013 ccaaaattttgaggcctaaagtcattgattgggttgcttggcacttaggccggcc 19527959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 17095626 - 17095682
Alignment:
Q  316 acccaaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    ||||||||| |||||||||| | ||||||||||||| ||||| ||||||||||||||    
T  17095626 acccaaaatcttgaggcctataacccttgcttgggtggcttgacccttaggccggcc 17095682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 28440818 - 28440751
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagag 303  Q
    ||||||| ||| ||||| ||| |||||||| |||||||||||||||   ||||||||||||||||||||||    
T  28440818 agttaaggtatgcaaatatctgtaatttatttgtcatataatatac---taaccaaattaattttttagag 28440751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 37941308 - 37941359
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataa 284  Q
    ||||||||||| |||||||||  ||||||||| |||||||||||||||||||    
T  37941308 agttaagttatacaaatgtctgcaatttatctatcatataatatacttataa 37941359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 3956134 - 3956187
Alignment:
Q  319 caaaattttgaggcctaaagcccttgcttgggttgcttggcccttaggccggcc 372  Q
    |||||| | |||||||||||||||||||||||| |||| |||||| || |||||    
T  3956134 caaaatctggaggcctaaagcccttgcttgggtggcttagcccttgggtcggcc 3956187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 39601000 - 39600947
Alignment:
Q  235 ttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaa 288  Q
    ||||||||| |||||||||||||||| | ||||||||  |||| ||||||||||    
T  39601000 ttaagttatgcaaatgtctataatttgtttgtcatattttatatttataaccaa 39600947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 48; Significance: 6e-18; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 7566 - 7637
Alignment:
Q  233 agttaagttatccaaatgtctataatttatctgtcatataatatacttataaccaaattaattttttagagg 304  Q
    ||||||| |||  ||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||    
T  7566 agttaagctatgaaaatgtctataatttatctatcatataatatgcttctaaccaaattaattttttagagg 7637  T

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