View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12221_high_19 (Length: 259)
Name: NF12221_high_19
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12221_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 26664766 - 26664535
Alignment:
| Q |
15 |
ctgtgatccgctaccacagttgtcaatatttatctactttcatgaacttatagatatactattattatctatgttttacagatttctgaaagcaaggaaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26664766 |
ctgtgatccgctaccacagttgtcaatatttatctactttcatgaacttatagatatactattattatttatgttttacagatttctgaaagcaaggaaa |
26664667 |
T |
|
| Q |
115 |
tttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatggaggtaaattatgtaacaagat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26664666 |
tttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatggaggtaaattatgtaacaagat |
26664567 |
T |
|
| Q |
215 |
tgaactatgcgatgattaagtaattgatgtcc |
246 |
Q |
| |
|
||||||||| |||||||||||| ||||||||| |
|
|
| T |
26664566 |
tgaactatgtgatgattaagtacttgatgtcc |
26664535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 26671740 - 26671617
Alignment:
| Q |
94 |
agatttctgaaagcaaggaaatttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatgg |
193 |
Q |
| |
|
|||||||| ||||||||||| |||||||||| ||| |||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
26671740 |
agatttcttaaagcaaggaagtttgatattgaaaaagcaaagaatatgtgggctgatatgctacaatggaggaaggaatttggtgctgatacaattatgg |
26671641 |
T |
|
| Q |
194 |
aggtaaattatgtaacaagattga |
217 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
26671640 |
aggtaaattatgtaacaagattga |
26671617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 115 - 230
Target Start/End: Complemental strand, 26643786 - 26643671
Alignment:
| Q |
115 |
tttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatggaggtaaattatgtaacaagat |
214 |
Q |
| |
|
|||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||| |||| |
|
|
| T |
26643786 |
tttgatattgaaaaagcaaagcagatgtgggctgatatgctacaatggaggaaggagtttggtattgatacaattatgaaggtaaattatgtaacgagat |
26643687 |
T |
|
| Q |
215 |
tgaactatgcgatgat |
230 |
Q |
| |
|
||| || ||||||||| |
|
|
| T |
26643686 |
tgacctttgcgatgat |
26643671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 26638613 - 26638706
Alignment:
| Q |
105 |
agcaaggaaatttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatggaggta |
198 |
Q |
| |
|
||||||||| ||||| |||| ||| ||||||| |||||||| |||||||| ||||||||| ||| ||||||||||| || || ||||||||| |
|
|
| T |
26638613 |
agcaaggaagtttgacattgaaaaaacaaagcaaatgtgggcagatatgctccaatggaggagggaatttggtgctgacactatcatggaggta |
26638706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 94 - 200
Target Start/End: Complemental strand, 54781535 - 54781429
Alignment:
| Q |
94 |
agatttctgaaagcaaggaaatttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatgg |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||| ||||||| | ||||||||||||||| || |||||| |
|
|
| T |
54781535 |
agatttctgaaagcaaggaaatttgatattgaaaaagcaaagcatatgtgggctgacatgctacaatggagaagggagtttggtgctgacaccattatgc |
54781436 |
T |
|
| Q |
194 |
aggtaaa |
200 |
Q |
| |
|
||||||| |
|
|
| T |
54781435 |
aggtaaa |
54781429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 52489740 - 52489644
Alignment:
| Q |
101 |
tgaaagcaaggaaatttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatggaggt |
197 |
Q |
| |
|
||||||||||||| |||||||||| || ||||||| ||||||||| | ||| | |||||||||| || | |||| | ||||||||||| ||||| |
|
|
| T |
52489740 |
tgaaagcaaggaagtttgatattgagaaagcaaagcttatgtgggccaacatgatccaatggaggaaagactatggtacagatacaattatagaggt |
52489644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 197
Target Start/End: Complemental strand, 7210221 - 7210125
Alignment:
| Q |
101 |
tgaaagcaaggaaatttgatattggaaaggcaaagcatatgtgggctgatatgctagaatggaggaaggagtttggtgctgatacaattatggaggt |
197 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||| ||||||||| | ||| | | |||||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
7210221 |
tgaaagcgaggaaatttgatattgaaaaggcaaagctcatgtgggctaacatgatccagtggaggaaagagtatggtactgatacaattatggaggt |
7210125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University