View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12221_high_20 (Length: 252)

Name: NF12221_high_20
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12221_high_20
NF12221_high_20
[»] chr7 (6 HSPs)
chr7 (11-119)||(7799386-7799494)
chr7 (120-243)||(42897676-42897805)
chr7 (120-160)||(46358019-46358059)
chr7 (137-172)||(46913461-46913496)
chr7 (207-243)||(7799600-7799636)
chr7 (136-172)||(41969793-41969829)
[»] chr5 (7 HSPs)
chr5 (137-227)||(34225693-34225782)
chr5 (195-233)||(26326804-26326842)
chr5 (185-239)||(33727279-33727332)
chr5 (185-239)||(33798562-33798615)
chr5 (139-172)||(3058979-3059012)
chr5 (136-169)||(18113834-18113867)
chr5 (120-165)||(26326722-26326767)
[»] chr3 (7 HSPs)
chr3 (137-227)||(50385874-50385962)
chr3 (137-177)||(43055600-43055640)
chr3 (126-166)||(49430633-49430673)
chr3 (137-172)||(498032-498067)
chr3 (136-177)||(24758600-24758641)
chr3 (136-177)||(24767597-24767638)
chr3 (136-177)||(53446020-53446061)
[»] chr1 (6 HSPs)
chr1 (120-177)||(32940695-32940752)
chr1 (137-227)||(2123801-2123891)
chr1 (137-175)||(50158606-50158644)
chr1 (137-172)||(33403441-33403476)
chr1 (137-172)||(38741000-38741035)
chr1 (127-172)||(29702453-29702498)
[»] chr4 (3 HSPs)
chr4 (126-174)||(51513126-51513174)
chr4 (137-172)||(2917955-2917990)
chr4 (136-172)||(28323089-28323125)
[»] chr8 (1 HSPs)
chr8 (137-172)||(29247174-29247209)
[»] chr6 (2 HSPs)
chr6 (137-172)||(595544-595579)
chr6 (137-176)||(841960-841999)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 119
Target Start/End: Original strand, 7799386 - 7799494
Alignment:
Q  11 ctagcaaataatccttctatgaacaaagatttattgaattgagagaacaaatattattcacaaatctgaaaaattgcaatgtaatgcaacatttatctat 110  Q
    |||||||||||||||||||||||||||||  || ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7799386 ctagcaaataatccttctatgaacaaagaactactgaattgagagaataaatattattcacaaatctgaaaaattgcaatgtaatgctacatttatctat 7799485  T
Q  111 actatgcaa 119  Q
     ||||||||    
T  7799486 tctatgcaa 7799494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 42897805 - 42897676
Alignment:
Q  120 catggacggatccaatttgaaacatggtgtggcagttgccataccagattatttcccannnnnnn------catatacttagacttaaataattatacat 213  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||| ||    
T  42897805 catgggcggatccagtttgaaacatggtgtggcagttgccataccagattatttcctttttttttttttttcatatacttagacttaaataattatatat 42897706  T
Q  214 ataatataagtcgcttacatgtcacaggtt 243  Q
    ||||||||||| ||||||||||||||||||    
T  42897705 ataatataagttgcttacatgtcacaggtt 42897676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 46358059 - 46358019
Alignment:
Q  120 catggacggatccaatttgaaacatggtgtggcagttgcca 160  Q
    ||||| |||||||| ||||||||||||||||||||||||||    
T  46358059 catgggcggatccagtttgaaacatggtgtggcagttgcca 46358019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 46913496 - 46913461
Alignment:
Q  137 tgaaacatggtgtggcagttgccataccagattatt 172  Q
    |||||||||||||||||||||||| |||||||||||    
T  46913496 tgaaacatggtgtggcagttgccacaccagattatt 46913461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 7799600 - 7799636
Alignment:
Q  207 tatacatataatataagtcgcttacatgtcacaggtt 243  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  7799600 tatatatataatataagtcgctcacatgtcacaggtt 7799636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 41969793 - 41969829
Alignment:
Q  136 ttgaaacatggtgtggcagttgccataccagattatt 172  Q
    |||||||||||||||||| |||||| |||||||||||    
T  41969793 ttgaaacatggtgtggcacttgccacaccagattatt 41969829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 34225693 - 34225782
Alignment:
Q  137 tgaaacatggtgtggcagttgccataccagattatttcccannnnnnncatatacttagacttaaataattatacatataatataagtcgc 227  Q
    |||||||||||||||||||||||| ||||||||||| | |        ||||||||| ||||||||| |||||| ||||||||||||||||    
T  34225693 tgaaacatggtgtggcagttgccacaccagattattcctcttttttttcatatactt-gacttaaattattatatatataatataagtcgc 34225782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 26326804 - 26326842
Alignment:
Q  195 gacttaaataattatacatataatataagtcgcttacat 233  Q
    |||||||||||||||| ||||||||||||||||| ||||    
T  26326804 gacttaaataattatatatataatataagtcgctaacat 26326842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 33727279 - 33727332
Alignment:
Q  185 catatacttagacttaaataattatacatataatataagtcgcttacatgtcaca 239  Q
    ||||||||| |||||||||||||||| ||||||||||||||| | |||| |||||    
T  33727279 catatactt-gacttaaataattatatatataatataagtcgttcacatatcaca 33727332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 33798562 - 33798615
Alignment:
Q  185 catatacttagacttaaataattatacatataatataagtcgcttacatgtcaca 239  Q
    ||||||||| |||||||||||||||| ||||||||||||||| | |||| |||||    
T  33798562 catatactt-gacttaaataattatatatataatataagtcgttcacatatcaca 33798615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 139 - 172
Target Start/End: Original strand, 3058979 - 3059012
Alignment:
Q  139 aaacatggtgtggcagttgccataccagattatt 172  Q
    |||||||||||||||||||||| |||||||||||    
T  3058979 aaacatggtgtggcagttgccacaccagattatt 3059012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 18113867 - 18113834
Alignment:
Q  136 ttgaaacatggtgtggcagttgccataccagatt 169  Q
    ||||||||||||||||||||||||| ||||||||    
T  18113867 ttgaaacatggtgtggcagttgccacaccagatt 18113834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 26326722 - 26326767
Alignment:
Q  120 catggacggatccaatttgaaacatggtgtggcagttgccatacca 165  Q
    ||||| |||||||| |||| ||||||||||||||||||||| ||||    
T  26326722 catgggcggatccagtttgcaacatggtgtggcagttgccacacca 26326767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 227
Target Start/End: Original strand, 50385874 - 50385962
Alignment:
Q  137 tgaaacatggtgtggcagttgccataccagattatttcccannnnnnncatatacttagacttaaataattatacatataatataagtcgc 227  Q
    |||||||||||||||||||||||| ||||||||| |||||        ||||||||| ||||||||| |||||| ||||||||||||||||    
T  50385874 tgaaacatggtgtggcagttgccacaccagatta-ttcccttttttttcatatactt-gacttaaattattatatatataatataagtcgc 50385962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 177
Target Start/End: Complemental strand, 43055640 - 43055600
Alignment:
Q  137 tgaaacatggtgtggcagttgccataccagattatttccca 177  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  43055640 tgaaacatggtgtggcagttgccacaccagattatttccca 43055600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 49430673 - 49430633
Alignment:
Q  126 cggatccaatttgaaacatggtgtggcagttgccataccag 166  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  49430673 cggatccactttgaaacatggtgtggcagttgccacaccag 49430633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 498067 - 498032
Alignment:
Q  137 tgaaacatggtgtggcagttgccataccagattatt 172  Q
    |||||||||||||||||||||||| |||||||||||    
T  498067 tgaaacatggtgtggcagttgccacaccagattatt 498032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 24758641 - 24758600
Alignment:
Q  136 ttgaaacatggtgtggcagttgccataccagattatttccca 177  Q
    |||||||||||||||||| |||||| ||||||||||| ||||    
T  24758641 ttgaaacatggtgtggcacttgccacaccagattattcccca 24758600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 24767638 - 24767597
Alignment:
Q  136 ttgaaacatggtgtggcagttgccataccagattatttccca 177  Q
    |||||||||||||||||| |||||| ||||||||||| ||||    
T  24767638 ttgaaacatggtgtggcacttgccacaccagattattcccca 24767597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 53446061 - 53446020
Alignment:
Q  136 ttgaaacatggtgtggcagttgccataccagattatttccca 177  Q
    |||||||||||||||||| |||||| ||||||||||| ||||    
T  53446061 ttgaaacatggtgtggcacttgccacaccagattattcccca 53446020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 32940695 - 32940752
Alignment:
Q  120 catggacggatccaatttgaaacatggtgtggcagttgccataccagattatttccca 177  Q
    ||||| |||||| ||| |||||||||||||||||||||||| ||||||||||| ||||    
T  32940695 catgggcggatctaatatgaaacatggtgtggcagttgccacaccagattattcccca 32940752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 2123891 - 2123801
Alignment:
Q  137 tgaaacatggtgtggcagttgccataccagattatttccc-annnnnnncatatacttagacttaaataattatacatataatataagtcgc 227  Q
    |||||||||||||||||||||||| ||||||||||| |||         ||||||||| ||||||||| |||||| ||||||||||||||||    
T  2123891 tgaaacatggtgtggcagttgccacaccagattattcccctttttttttcatatactt-gacttaaattattatatatataatataagtcgc 2123801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 175
Target Start/End: Original strand, 50158606 - 50158644
Alignment:
Q  137 tgaaacatggtgtggcagttgccataccagattatttcc 175  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  50158606 tgaaacatggtgtggcagttgccacaccagattatttcc 50158644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 33403441 - 33403476
Alignment:
Q  137 tgaaacatggtgtggcagttgccataccagattatt 172  Q
    |||||||||||||||||||||||| |||||||||||    
T  33403441 tgaaacatggtgtggcagttgccacaccagattatt 33403476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 38741000 - 38741035
Alignment:
Q  137 tgaaacatggtgtggcagttgccataccagattatt 172  Q
    |||||||||||||||||||||||| |||||||||||    
T  38741000 tgaaacatggtgtggcagttgccacaccagattatt 38741035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 29702453 - 29702498
Alignment:
Q  127 ggatccaatttgaaacatggtgtggcagttgccataccagattatt 172  Q
    |||||||  |||||||||||||||||| |||||| |||||||||||    
T  29702453 ggatccatattgaaacatggtgtggcacttgccacaccagattatt 29702498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 51513174 - 51513126
Alignment:
Q  126 cggatccaatttgaaacatggtgtggcagttgccataccagattatttc 174  Q
    |||||||| | |||||||||||||||||||||||| || ||||||||||    
T  51513174 cggatccactgtgaaacatggtgtggcagttgccacactagattatttc 51513126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 2917990 - 2917955
Alignment:
Q  137 tgaaacatggtgtggcagttgccataccagattatt 172  Q
    |||||||||||||||||||||||| |||||||||||    
T  2917990 tgaaacatggtgtggcagttgccacaccagattatt 2917955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 172
Target Start/End: Original strand, 28323089 - 28323125
Alignment:
Q  136 ttgaaacatggtgtggcagttgccataccagattatt 172  Q
    |||||||||||||||||| |||||| |||||||||||    
T  28323089 ttgaaacatggtgtggcacttgccacaccagattatt 28323125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Complemental strand, 29247209 - 29247174
Alignment:
Q  137 tgaaacatggtgtggcagttgccataccagattatt 172  Q
    |||||||||||||||||||||||| |||||||||||    
T  29247209 tgaaacatggtgtggcagttgccacaccagattatt 29247174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 172
Target Start/End: Original strand, 595544 - 595579
Alignment:
Q  137 tgaaacatggtgtggcagttgccataccagattatt 172  Q
    |||||||||||||||||||||||| |||||||||||    
T  595544 tgaaacatggtgtggcagttgccacaccagattatt 595579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 176
Target Start/End: Original strand, 841960 - 841999
Alignment:
Q  137 tgaaacatggtgtggcagttgccataccagattatttccc 176  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  841960 tgaaacatggtgtggcagttgcaacaccagattatttccc 841999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University