View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12221_high_3 (Length: 746)
Name: NF12221_high_3
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12221_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 8524746 - 8524933
Alignment:
| Q |
10 |
aacctgtggaagttacaaaaagcatggatcgaagaatatagttaatttgcnnnnnnnaattaattgtgcctaaatttcgccagcctaaagaggctgtgcc |
109 |
Q |
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| T |
8524746 |
aacccgtggaagttacaaaaagcatggatcgaagaatatatttaatttgctttttttaattaattgtgcctaaatttcacca-cctaaagaggctgtgcc |
8524844 |
T |
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| Q |
110 |
gggctgtgcactttcagcccatcacatcaaggtgacaggattcgaacctatggccctctgtacccaaaacagatgcgctgaccagactg |
198 |
Q |
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| T |
8524845 |
gggttgtgcactttcagcccatcacatcaaggtaacaggattcgaacctatggccctctgtacccaaaacagatgcactgaccagactg |
8524933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 13696943 - 13697019
Alignment:
| Q |
114 |
tgtgcactttcagcccatcacatcaaggtgacaggattcgaacctatggccctctgtacccaaaacagatgcgctga |
190 |
Q |
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| T |
13696943 |
tgtgcactttcaacccatcacatcaaagtgacaggattcgaacctatggccctctgtacccagaacagatacgctga |
13697019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 503 - 538
Target Start/End: Original strand, 24680327 - 24680362
Alignment:
| Q |
503 |
aaggattttcagtcctttgctctaaccagctgagct |
538 |
Q |
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| T |
24680327 |
aaggattttcagtcctttgctctaaccagctgagct |
24680362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 503 - 538
Target Start/End: Complemental strand, 3206492 - 3206457
Alignment:
| Q |
503 |
aaggattttcagtcctttgctctaaccagctgagct |
538 |
Q |
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| T |
3206492 |
aaggattttcagtcctttgctctaaccaactgagct |
3206457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 389
Target Start/End: Complemental strand, 16494945 - 16494912
Alignment:
| Q |
356 |
ggcgacgccaaaaagccgtatagtgcaggagcgc |
389 |
Q |
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| T |
16494945 |
ggcgatgccaaaaagccgtatagtgcaggagcgc |
16494912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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