View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12221_high_4 (Length: 621)
Name: NF12221_high_4
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12221_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Complemental strand, 19835849 - 19835312
Alignment:
| Q |
18 |
gtttcccctcattataaatagtgaaaaacctttgttcaatatcattgaaacgacaaccactggctagttctttttcttgccaaccattatgcatcctttt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
19835849 |
gtttcccctcattataaatagtgaaaaacctttgttcaatatcattgaaacgacaaccacgggctggttctttttcttgccaaccattatgcatcctttt |
19835750 |
T |
|
| Q |
118 |
tcattaaatcttacataataacctttttgtttgagttttgcaacacttgagatatctttagatgaaacacgtacattattgatgggttttcgactaccct |
217 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19835749 |
tcattgaatcttacttaataacctttttgtttgagttttgcaacacttgagatatctttagatgaaacacatacattattgatgggttttcgactaccct |
19835650 |
T |
|
| Q |
218 |
cttttgctttggacatcaattattcttttgccttgaacattaagtgagttgct-tctctaaattttacaaacacttaatttctttcacttttctcattta |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19835649 |
cttttgctttggacatcaattattcttttgccttgaacattaagtgagttgctctctctaaattttacaaacacttaatttctttcacttttctcattta |
19835550 |
T |
|
| Q |
317 |
tcctatagtttatcatcatgcaatatgatttctctagctgatacaatatataaatcaatagtgatattttggagaaaaaagatggtgtaaaaagtacccc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19835549 |
tcctatagtttatcatcatgcaatatgatttctctagctgatacaatatataaatcaatagtgatattttggagaaaaaagatggtgtaaaaagtacccc |
19835450 |
T |
|
| Q |
417 |
ataaaatcctatacttgtaagacagaagcccaaatgggccatgaaaagcccataaacatcacatgcgtagaaattttaccatgtaccccaataattatac |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19835449 |
ataaaatcctatacttgtaagacagaagcccaaatgggccatgaaaagcccataaatatcacatgcgtagaaatttaaccatgtaccccaataattatac |
19835350 |
T |
|
| Q |
517 |
tcacacccttgtatttgtctgaattatctattttactc |
554 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19835349 |
tcacacccttgtatttgtgtgaattatctattttactc |
19835312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 557 - 609
Target Start/End: Complemental strand, 19832215 - 19832163
Alignment:
| Q |
557 |
atacataaactaaaacaagtgaatagacactttcatcgttgaatttgcacagg |
609 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19832215 |
atacataaactaaaacgagtgaatagacactttcatcgttgaatttgcacagg |
19832163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University