View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12221_high_6 (Length: 517)
Name: NF12221_high_6
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12221_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 38 - 495
Target Start/End: Complemental strand, 1330152 - 1329691
Alignment:
| Q |
38 |
actgttttgcttatgattctagggagagttgctgttattagt-gcttctgttttcagagctgggggtagggtctgcggttagcgccatgttggcacggtt |
136 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1330152 |
actgttttgcttatgcttctagggagagttgctgttattagttgcttctgttttcagagctgggggtagggtctgcggttagcgccatgttggcacggtt |
1330053 |
T |
|
| Q |
137 |
ttggtgttccatgatagccgtgtattttgctgcctggagtttggnnnnnnncttgtattgtttatgctcgtccacaactattacgtcttgtatgggttgt |
236 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1330052 |
ttggtgttccatgatagccgtgtattttactgcctggagtttggtttttttcttgtattgtttatgctcgtccacaactattacgtcttgtatgggttgt |
1329953 |
T |
|
| Q |
237 |
tggtttaataaatatgatgtttcnnnnnnnnnnnnnnn---cataaagagtaaagacaagttgcacaaatagatgattgtggcagcgaccaactcctaag |
333 |
Q |
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| T |
1329952 |
tggtttaataattatgatgtttcaaaacaaaacaaaaaaaccataaagagtaaagacaagttgcacaaatagatgattgtggcagcgaccaactcctaag |
1329853 |
T |
|
| Q |
334 |
acataacagaagtagcaacgacagtgtcattcggtcgtgatatcaacagtttgtcaatacaatttgcaaaagtgttacaagcatgttgaggttgatatct |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1329852 |
acataacagaagtagcaacgacagtgtcattcggtcgtgatatcaacagtttgtcaatacaatttgcaaaagtgttacaagcatgttcaggttgatatct |
1329753 |
T |
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| Q |
434 |
caatgggaccactaattttggtctcgtttagcagccaacaaacttgccttagtctgccagca |
495 |
Q |
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| T |
1329752 |
caatgggaccactaattttggtctcgtttagcagccaacaaacttgccttagtctgccagca |
1329691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 425 - 495
Target Start/End: Complemental strand, 44188528 - 44188458
Alignment:
| Q |
425 |
ttgatatctcaatgggaccactaattttggtctcgtttagcagccaacaaacttgccttagtctgccagca |
495 |
Q |
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|||||||||||| |||||||| || ||||||| |||||||||||||||||||||||||||| | |||||| |
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| T |
44188528 |
ttgatatctcaaacggaccactgatattggtcttgtttagcagccaacaaacttgccttagtgtcccagca |
44188458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 40 - 250
Target Start/End: Complemental strand, 9850258 - 9850041
Alignment:
| Q |
40 |
tgttttgcttatgattctagggagagttgctgttattagtgcttctgttttcagagctgggggtagggtctgcggttagcgccatgttggca------cg |
133 |
Q |
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|||||| |||||| |||||||||||||||||| || |||| |||| ||||||||||||||||| ||||||| |||||||||||| |||| || |
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| T |
9850258 |
tgttttacttatgcttctagggagagttgctgccataagtgattctattttcagagctgggggtggggtctgtggttagcgccattttggtgtttcttcg |
9850159 |
T |
|
| Q |
134 |
gtttt-ggtgttccatgatagccgtgtattttgctgcctggagtttggnnnnnnncttgtattgtttatgctcgtccacaactattacgtcttgtatggg |
232 |
Q |
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|||| ||||||||||||||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9850158 |
ttttttggtgttccatgatagccatgtacttttctgcctggagtttggtatttttcttgtattgtttatgctcgtccacaactattacgtcttgtatggg |
9850059 |
T |
|
| Q |
233 |
ttgttggtttaataaata |
250 |
Q |
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|||||||||||||||||| |
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| T |
9850058 |
ttgttggtttaataaata |
9850041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 37 - 144
Target Start/End: Complemental strand, 14247366 - 14247259
Alignment:
| Q |
37 |
gactgttttgcttatgattctagggagagttgctgttattagtgcttctgttttcagagctgggggtagggtctgcggttagcgccatgttggcacggtt |
136 |
Q |
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|||||||||||||||| ||| || ||||||| |||| |||| |||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||| |
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| T |
14247366 |
gactgttttgcttatgcttccagcgagagtttctgtcattattgcttctgttttcagagctgggggcagggtctgcggttagtgccattttggcacggtt |
14247267 |
T |
|
| Q |
137 |
ttggtgtt |
144 |
Q |
| |
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|||||||| |
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|
| T |
14247266 |
ttggtgtt |
14247259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 420
Target Start/End: Original strand, 26414275 - 26414353
Alignment:
| Q |
341 |
agaagtagcaacgacagtgtcattcggtcgtgatatcaacagtttgtcaatacaatttgcaaaagtgttacaagcatgtt |
420 |
Q |
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||||| ||||||||| || |||||| |||||||||||||||| ||||| ||||| |||||||||||||| ||||||||| |
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| T |
26414275 |
agaaggagcaacgacggtatcattcagtcgtgatatcaacagattgtccatacagattgcaaaagtgtta-aagcatgtt |
26414353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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