View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12221_high_8 (Length: 491)
Name: NF12221_high_8
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12221_high_8 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 190 - 491
Target Start/End: Original strand, 7798764 - 7799044
Alignment:
| Q |
190 |
tgatcaaaattctagtttctaacaactagggcatggatcagatcaatattcttctcaataaagatgaataagagttgtagttttgctctattaacaatga |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7798764 |
tgatcaaaattctagtttctaacaactagggcatggatcagatcaatattcttctcaataaagatgaata--------------------ttaacaatga |
7798843 |
T |
|
| Q |
290 |
tcatagcataatgaagatgaataagagttgtatagttcttacttgatgatgatgaatctcgtagggttgcctctatctcttgtaagaatgataattgagt |
389 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7798844 |
tcatagcataatgaagatgaataagagttgtatagttcttacttgatgatgatgaatctcgtagggttgcctcaatctcttgtaagaatgataattgagt |
7798943 |
T |
|
| Q |
390 |
gtggagggaatgagggagccgtgttttgcttctagggttaggggaagtatttatgtttctattttattttgttacaaaatcaactagtcataataaatcc |
489 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| || ||||||| || |
|
|
| T |
7798944 |
gtggagggaaagagggagccgtgttttgcttctagggttaggggaagtatttatgtttccattttatttt-ttacaaaatcaactaatcctaataaaacc |
7799042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 7798550 - 7798723
Alignment:
| Q |
18 |
agtttcgacttgttcattggtcatcacattcacttgcatcattccaacattcgcgttctgattaaaaccgttcctctgccactccatctctttctttttc |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7798550 |
agtttcaacttgttcattggtcatcacattcacttgcatcattccaacattcgcgttctgattaaaaccgttcctctgccactccatctctttctttttc |
7798649 |
T |
|
| Q |
118 |
tgtaaaataaaaagcgattaatgattttcatttctatnnnnnnngtgatctgtgagaagaagaaaccaatggtg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7798650 |
tgtaaaataaaaagcgattaatgattttcatttctataaaaaaagtgatctgtgagaagaagaaaccaatggtg |
7798723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University