View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12221_low_10 (Length: 458)
Name: NF12221_low_10
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12221_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 45078637 - 45078189
Alignment:
| Q |
1 |
accatctggtgaaacagcaacagtgttgacatatccagaatgtccagcaagtgtgttcctcagcttacagttggtcagattctaaaccttaacagtcctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
45078637 |
accatctggtgaaacagcaacagtgttgacatatccagaatgtccagcaagtgtgttcctcagcttacagttggtcagattccaaaccttaacagtcctg |
45078538 |
T |
|
| Q |
101 |
tcccacgacgccgagacaattgttggctgaagagtgctagggctgaatctgacacagctaacccaatcagaatgagcatcaccatcttggatagtgtact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45078537 |
tcccacgacgccgagacaattgttggctgaagagtgctagggctgaatctgacacagctaacccaatcagaatgagcatcaccatcttggatagtgtact |
45078438 |
T |
|
| Q |
201 |
tgcactcaccaagagtgttccagagcttaatcgtgcggtcccgagaagcggacacgatctgacggttatcaatggagaaagcgacggagagaacgtcttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45078437 |
tgcactcaccaagagtgttccagagcttaatcgtgcggtcccgagaagcggacacgatctgacggttatcaatggagaaagcgacggagagaacgtcttt |
45078338 |
T |
|
| Q |
301 |
ggtgtgaccaacaaatcggcgagcagaggttccggcgttgagatcccagagacgaagctcaccagcccatgaaccagagagagcaaactgaccatcagat |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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| T |
45078337 |
ggtgtgaccaacaaatcggcgagcggaggttccggcgttgagatcccagagacgaagctcaccatcccatgaaccagagagagcaaactgcccatcagat |
45078238 |
T |
|
| Q |
401 |
gatagaacaacatcctgaacgaagtgagagtgaccggttcgacggcggc |
449 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
45078237 |
gatagaactacatcctgaacgaagtgagagtgaccggtgagacggcggc |
45078189 |
T |
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