View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12221_low_11 (Length: 445)
Name: NF12221_low_11
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12221_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 413
Target Start/End: Complemental strand, 494131 - 493731
Alignment:
| Q |
13 |
catcaaataatacaaactgcaccatcaccaattcaaatggcgtgtttcccgatcgaagcatttgcagagctagcgaggttatgtacccaaccactgagac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
494131 |
catcaaataatacaaactgcaccatcaccaattcaaatggcgtgttccccgatcgaagcatttgcagagctagcgaggttatgtacccaaccactgaggc |
494032 |
T |
|
| Q |
113 |
ggagcttatatcaatagtcgcgttagcttcaaaaaacagcagaaaagtgaaagttgcaacgcgcttctctcacagcataccaaaactagcttgtcccgat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494031 |
ggagcttatatcaatagtcgcgttagcttcaaaaaacaacagaaaagtgaaagttgcaacgcgcttctctcacagcataccaaaactagcttgtcccgat |
493932 |
T |
|
| Q |
213 |
gataatggacttctaataagcacaaaaaatctcaaccgtgtgttgaaagtcgatgtcaaattgttgagaatgacggtagagagcggtgtaacattgagag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
493931 |
gataatggacttctaataagcacaaaaaatctcaaccgtgtgttgaaagtcgatgtcaaattgttgagaatgacggtagagagcggtgtaacattgagag |
493832 |
T |
|
| Q |
313 |
agataattagtgaggctgcaaggtttgaaatggctctgccaaatacaccatattggtggggtttaaccattggtggcctaattagcaccggtgcacatgg |
412 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
493831 |
agataatcagtgaggctgcaaggtttgaaatggctctgccaaatacaccatattggtggggtttaaccattggtggcctaattagcactggtgcacatgg |
493732 |
T |
|
| Q |
413 |
a |
413 |
Q |
| |
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| |
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| T |
493731 |
a |
493731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 13 - 333
Target Start/End: Original strand, 49013425 - 49013754
Alignment:
| Q |
13 |
catcaaataatacaaactgcaccatcaccaattcaaatggcgtgtttcccgatcgaagcatttgcagagctagcgaggttatgtacccaaccactgagac |
112 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||| ||||||| ||| || || | ||||||||||| ||||||||||||| |||| |||||| | ||| |
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| T |
49013425 |
catcaaataacacaaactgcaccatcacgaattccaatggcgcgttccctgaccaaagcatttgcaaagctagcgaggttgtgtatccaacctcagaggt |
49013524 |
T |
|
| Q |
113 |
ggagcttatatcaatagtcgcgttagcttcaaaaaacagcagaaaagtgaaagttgcaacgcgcttctctcacagcataccaaaactagcttgtcccgat |
212 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||| |||||||||| ||||||||||| |||||||| ||||| ||| ||||||| ||| |
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| T |
49013525 |
agagcttatatcaatagtcgcgttagcttcagaaaacaacagaaaaatgaaagttgcgacgcgcttctcccacagcattccaaagctaacttgtcctgat |
49013624 |
T |
|
| Q |
213 |
gat---------aatggacttctaataagcacaaaaaatctcaaccgtgtgttgaaagtcgatgtcaaattgttgagaatgacggtagagagcggtgtaa |
303 |
Q |
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||| ||||||||||| ||||||||||| ||||||| |||||||||| | ||||| | ||| ||| | |||||||| ||||| | |
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| T |
49013625 |
gatgatacccaaaatggacttctggtaagcacaaaatttctcaacaatgtgttgaaaattgatgtggatgcaatgacaataagtgtagagagtggtgtga |
49013724 |
T |
|
| Q |
304 |
cattgagagagataattagtgaggctgcaa |
333 |
Q |
| |
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|||||||| |||| |||||||||||||||| |
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|
| T |
49013725 |
cattgagacagatcattagtgaggctgcaa |
49013754 |
T |
|
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