View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12221_low_12 (Length: 411)
Name: NF12221_low_12
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12221_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 25738979 - 25738675
Alignment:
| Q |
1 |
gcacactcagaattctacaggattccatggtctgcattctgctgtgctggcgagaaacttctgcataaatgatacttcgagtgtccataatagttgccat |
100 |
Q |
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| T |
25738979 |
gcacactcagaattctacaggattccatggtctgcattctgctgtgctggcgagaaacttctgcataaatgatacttcgagtgtccataatagttgccat |
25738880 |
T |
|
| Q |
101 |
aacaaacagcctacatcgagttgaatttcaagtaaactttctataaatcgaatgtttcttattttccattctcattacttaagatatcacatcctagaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25738879 |
aacaaacagcctacatcgagttgaatttcaagtaaactttctataaatcgaatgtttcttattttccattctcattacttaagatatcacatcctagaca |
25738780 |
T |
|
| Q |
201 |
ataatagagaaagagaatgcaaacattgaaaaaccatatcgtgaactttcactccatttttacatagttatactgtcaacaaacaccataattaaatata |
300 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25738779 |
ataat----aaagagaatgcaaacattgaaaaaccatatcgtgaactttcactccatttttacatagttatactgtcaacaaacaccataattaaatata |
25738684 |
T |
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| Q |
301 |
caacattgt |
309 |
Q |
| |
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||||||||| |
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| T |
25738683 |
caacattgt |
25738675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 394
Target Start/End: Complemental strand, 25738631 - 25738590
Alignment:
| Q |
353 |
ttttcacgcagaaatggaagagtgaaaaaggagacattgaca |
394 |
Q |
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| T |
25738631 |
ttttcacgcagaaatggaagagtgaaaaaggagacattgaca |
25738590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 183 - 274
Target Start/End: Original strand, 45304322 - 45304413
Alignment:
| Q |
183 |
gatatcacatcctagacaataatagagaaagagaatgcaaacattgaaaaaccatatcgtgaactttcactccatttttacatagttatact |
274 |
Q |
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| T |
45304322 |
gataccacatctaagacaatgatagagaaagagaatgcaaatattgaaaaaccatattgcaaacttccactccatttttacatagttatact |
45304413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 45303146 - 45303206
Alignment:
| Q |
9 |
agaattctacaggattccatggtctgcattctgctgtgctggcgagaaacttctgcataaa |
69 |
Q |
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||||||||||||| ||||| ||||||| | ||| ||||||| | ||||||||||||||||| |
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| T |
45303146 |
agaattctacaggcttccacggtctgcgtcctgttgtgctgaccagaaacttctgcataaa |
45303206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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