View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12221_low_13 (Length: 372)
Name: NF12221_low_13
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12221_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 354
Target Start/End: Original strand, 42933459 - 42933799
Alignment:
| Q |
17 |
gtgctatggatcctgttggtggttgttatagattcattcaacagcttcaatctcaatatgaattttatcaagctgagcttcattttacacgtcaacaaat |
116 |
Q |
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| T |
42933459 |
gtgctatggatcctgttggtggttgttatagattcattcaacagcttcaatctcaatatgaattttatcaagctgagcttcatcttacacgtcaacaaat |
42933558 |
T |
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| Q |
117 |
ttctatttgtaaagctacacaatcacaac---------aacaatttgcctctgtggctaatcatcattataatgacatgcatgtcattaatcataacaat |
207 |
Q |
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| T |
42933559 |
ttctatttgtaaagctacacaatcacaacaacatcaacaacaatttgccgctgtgtctaatcatcattataatgacatgcatgtcattaatcataacaat |
42933658 |
T |
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| Q |
208 |
aacgaggataatgatgctgctttgaatattatcaatcattttaaccagcagcattttgttgatgatcaactgaatatgaatatgaatatgctgcctcaac |
307 |
Q |
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| T |
42933659 |
aacgaggataatgatgctgctttgaatattatcaatcattttaaccagcagcattttgttgatgatcaac------tgaatatgaatatgctgcctcaac |
42933752 |
T |
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| Q |
308 |
agcaattgcaactgcagcaacaatatgttgtcgatgatgtcggtatt |
354 |
Q |
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| T |
42933753 |
agcaattgcaactgcagcagcaatatgttgtcgatgatgtctgtatt |
42933799 |
T |
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