View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12221_low_15 (Length: 354)
Name: NF12221_low_15
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12221_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 38 - 347
Target Start/End: Complemental strand, 3435194 - 3434885
Alignment:
| Q |
38 |
actctatatgacgtagaaaaatgattgaatgcaaattgtataaataataggagccatcccattgtattacttaggaagaaattacacaaaccttcctcaa |
137 |
Q |
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| T |
3435194 |
actctatatgacgtagaaaaatgattgaatgcaaattgtataaataataggagccatcccattgtattacttaggaagaaattacacaaaccttcctcaa |
3435095 |
T |
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| Q |
138 |
gagttcctactcttctattaacctaaatcttatcctcattattctcttcaaatcctaaaatgggcgctgaaaagcctagatcttgtgcaacctactttga |
237 |
Q |
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| T |
3435094 |
gagttcctactcttctattaacctaaatcttatcctcattattctcttcaaatcctgaaatgggcgctgaaaagcctagatcttgtgcaacctactttga |
3434995 |
T |
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| Q |
238 |
gaattctaaaccctactttgccatgatccttttacagtttggctatgcaggcatgaacatcataaccaagctttctctcaatggagggatgagtcactat |
337 |
Q |
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| T |
3434994 |
gaattctaaaccctactttgccatgatccttttacagtttggctatgcaggcatgaacatcataaccaagctttctctcaatggagggatgagtcactat |
3434895 |
T |
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| Q |
338 |
gtcctcgttg |
347 |
Q |
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|||||||||| |
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| T |
3434894 |
gtcctcgttg |
3434885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 195 - 347
Target Start/End: Complemental strand, 3375934 - 3375782
Alignment:
| Q |
195 |
aaatgggcgctgaaaagcctagatcttgtgcaacctactttgagaattctaaaccctactttgccatgatccttttacagtttggctatgcaggcatgaa |
294 |
Q |
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| T |
3375934 |
aaatgggcgttgaaaagcttagatcttgtacaatctaccttgagaactctaagccctacattgctatgatccttttacaatttggctatgcaggcatgat |
3375835 |
T |
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| Q |
295 |
catcataaccaagctttctctcaatggagggatgagtcactatgtcctcgttg |
347 |
Q |
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| T |
3375834 |
tattataagcaagctttctctcaatggaggcatgagtcattatgtccttgttg |
3375782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 3376117 - 3376068
Alignment:
| Q |
94 |
tcccattgtattacttaggaagaaattacacaaaccttcctcaagagttc |
143 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |||||| |||| |
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| T |
3376117 |
tcccattgtattactttggaagaaattacacaaaccttgctcaagtgttc |
3376068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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