View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12221_low_25 (Length: 223)
Name: NF12221_low_25
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12221_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 23 - 188
Target Start/End: Complemental strand, 20669565 - 20669397
Alignment:
| Q |
23 |
ttacctgtaatatgcatttataattgattttgttattgttgttgacagtgcaagttccatcaatgtttgatttgtggttgataaatcctaca-gtgtgca |
121 |
Q |
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| T |
20669565 |
ttacctttaatatgtatttataattgattttgttattgttgttgacagtgcaagttccatcaatgtttgatttgtggttgataaatcctacaggtgtgca |
20669466 |
T |
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| Q |
122 |
ataaccaacc--tatctattcgatggcatccctctctgctctacagcacatagcaacaatggtttcatg |
188 |
Q |
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| T |
20669465 |
ataaccaacctatatctattcaatggcatccctctctgctctacaacacatagcaacaatggtttcatg |
20669397 |
T |
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Back To:
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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 28 - 188
Target Start/End: Complemental strand, 21726417 - 21726258
Alignment:
| Q |
28 |
tgtaatatgcatttataattgattttgttattgttgttgacagtgcaagttccatcaatgtttgatttgtggttgataaatcctaca-gtgtgcaataac |
126 |
Q |
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|||||||| |||||||| | ||||||||||||||||||| |||| ||| ||||| |||||||||||||||||||||| | |||| |||||| ||||| |
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| T |
21726417 |
tgtaatatacatttatatataattttgttattgttgttgagagtgtaagctccatgaatgtttgatttgtggttgataca-gatacatgtgtgc-ataac |
21726320 |
T |
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| Q |
127 |
caacctatctattcgatggcatccctctctgctctacagcacatagcaacaatggtttcatg |
188 |
Q |
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||||||||| ||| |||| |||||||||| |||||| |||| ||||||| ||||||||| |
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| T |
21726319 |
caacctatcaattttatggtatccctctctactctactatacatggcaacaacggtttcatg |
21726258 |
T |
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