View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12221_low_5 (Length: 536)
Name: NF12221_low_5
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12221_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 15 - 517
Target Start/End: Original strand, 34812313 - 34812818
Alignment:
| Q |
15 |
ctgtgcacatcaaagttaaaacacatatat--tgaaacttgggaatgatcttttgataaatcagtagtaaaatattaatataactggtaagttagaggac |
112 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34812313 |
ctgtgcacatcaaagttaaaacacatatataatgaaacttgggaatgatcttttgataaatcagtagtaaaatattaatataactggtaagttagaggac |
34812412 |
T |
|
| Q |
113 |
tacgagcagtaataccacaggtttgatagaaaagtagagctgctgattttctggtcattccagaagctaagacatctagagactcaaattgaggagctcc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34812413 |
tacgagcagtaataccacaggtttgatagaaaagtagagctgctgattttctggtcattccagaagctaagacatctagagactcaaattgaggagctcc |
34812512 |
T |
|
| Q |
213 |
acttactgatttaagagtgtcaaagtgtgatttcaactgactgtaacatt-aaaatcaataaataagctttaatgttaccaaaaatgtcatctataatgt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
34812513 |
acttactgatttaagagtgtcaaagtgtgatttcaactgactgtaacattcaaaatcaataaataagctttaatgttaccaaaaatatcatctataatgt |
34812612 |
T |
|
| Q |
312 |
aggttaataaaagattcatacgcatggattgattcggttatcttgtcactaggatgattgggatttccttgtgtttgcgtgggacctgtctccacaagaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34812613 |
aggttaataaaagattcatacgcatggattgattcggttatcttgtcactaggatgattgggatttccttgtgtttgcgtgggacctgtctccacaagaa |
34812712 |
T |
|
| Q |
412 |
gtactgaaaaggaacttacaaggctcagatatgtgttaagtggataaagaatatcaatgctggtatagaagcattaacaagtaatgtaccttgatcaggt |
511 |
Q |
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| T |
34812713 |
gtactgaaaaggaacttacaaggctcagatatgtgttaagtggataaagaatatcaatgctggtatagaagcattaacaagtaatgtaccttgatcaggt |
34812812 |
T |
|
| Q |
512 |
gttgga |
517 |
Q |
| |
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|||||| |
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| T |
34812813 |
gttgga |
34812818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 25 - 517
Target Start/End: Original strand, 35862772 - 35863259
Alignment:
| Q |
25 |
caaagttaaaacacatatattgaaacttgggaatgatcttttgataaatcagtagtaaaatattaatataactggtaagttagaggactacgagcagtaa |
124 |
Q |
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||||||||||||| |||| |||||||||||||||||||||| || ||||| |||||||||||||| || |||||||||||| | ||| | || |
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| T |
35862772 |
caaagttaaaacagatatgttgaaacttgggaatgatctttatattaatcattagtaaaatattaa-----cttgtaagttagagggatgtgagtaaaaa |
35862866 |
T |
|
| Q |
125 |
taccacaggtttgatagaaaagtagagctgctgattttctggtcattccagaagctaagacatctagagactcaaattgaggagctccacttactgattt |
224 |
Q |
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|||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| || ||| || ||| |||||||||||||||||||| ||||||| |
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| T |
35862867 |
taccacaggtttgatagaaaagtatagctgctgattttttggtcattccagcagctaggatatccagggacacaaattgaggagctccacttgctgattt |
35862966 |
T |
|
| Q |
225 |
aagagtgtcaaagtgtgatttcaactgactgtaacatt-aaaatcaataaataagctttaatgttaccaaaaatgtcatctataatgtaggttaataaaa |
323 |
Q |
| |
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| |||||||||| |||| ||||| |||||| ||||||| |||||||||| |||||||||| ||||||| |||| | || |||| | ||||||||||||| |
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| T |
35862967 |
atgagtgtcaaaatgtgctttcatctgactataacattcaaaatcaatacataagctttatcgttaccagaaatattatttatactttaggttaataaaa |
35863066 |
T |
|
| Q |
324 |
gattcatacgcatggattgattcggttatcttgtcactaggatgattgggatttccttgtgtttgcgtgggacctgtctccacaagaagtactgaaaagg |
423 |
Q |
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||||||||||| |||||||||| ||||||||||||||||| ||||||||| |||||||||||| | |||||||||||||||||||||||| |||||||| |
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| T |
35863067 |
gattcatacgcttggattgatttggttatcttgtcactagaatgattggggtttccttgtgttggagtgggacctgtctccacaagaagttctgaaaaga |
35863166 |
T |
|
| Q |
424 |
aacttacaaggctcagatatgtgttaagtggataaagaatatcaatgctggtatagaagcattaacaagtaatgtaccttgatcaggtgttgga |
517 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| || || | ||||| ||||||||||||||||||||||||||||||||| |
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| T |
35863167 |
aacctacaaggctcagatatgtgttaagtggataaagaatatcaatactagtct-gaagccttaacaagtaatgtaccttgatcaggtgttgga |
35863259 |
T |
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