View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12221_low_7 (Length: 505)
Name: NF12221_low_7
Description: NF12221
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12221_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 450; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 494
Target Start/End: Original strand, 26664011 - 26664487
Alignment:
| Q |
20 |
ttcataactaaactgacaa--tgaaaatgaagagcataaaaaatcacagcaactaagattgctcacctgagggtaattgtctacaagaatctttagaaat |
117 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26664011 |
ttcataactaaactgacaaaatgaaaatgaagagcataaaaaatcacagcaactaagattgctcacctgagggtaattgtctataagaatctttagaaat |
26664110 |
T |
|
| Q |
118 |
cgcttcatgatttcgcggtcagcctcttcaaggttgcaaaatccctaaaaacgcaactatagcataaatatttttgtatgttagaaatttaccggcagtg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26664111 |
cgcttcatgatttcgcggtcagcctcttcaaggttgcaaaatccctaaaaacgcaactatagcataaatatttttgtatgttagaaatttaccggcagtg |
26664210 |
T |
|
| Q |
218 |
aagaacaattcatggcaacatacgatgccttgaagatctaagattgtgatgcttgaatctatgtgcctcttggaagcaattgtgcaggcaggaaacttta |
317 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26664211 |
aagaacaattcatggcaacatacaatgccttgaagatctaagattgtgatgcttgaatctatgtgcctcttggaagcaattgtgcaagcaggaaacttta |
26664310 |
T |
|
| Q |
318 |
ttgcatgcatttcctcgcacctctgtgcgtggtacttcacatatctatcaatagttgtaacttgcataagtttgtttcgatccagtttttcaaatctttc |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26664311 |
ttgcatgcatttcctcgcacctctgtgcgtggtacttcacatatctatcaatagttgtaacttgcataagtttgtttcgatccagtttttcaaatctttc |
26664410 |
T |
|
| Q |
418 |
gatgaaaacaggtcttccctccttatcaacaccatgatagccatgtggattatacttaataacttcatctaattcat |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26664411 |
gatgaaaacaggtcttccctccttatcaacaccatgatagccatgtggattatacttaataacttcatttaattcat |
26664487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 220 - 485
Target Start/End: Original strand, 26671247 - 26671512
Alignment:
| Q |
220 |
gaacaattcatggcaacatacgatgccttgaagatctaagattgtgatgcttgaatctatgtgcctcttggaagcaattgtgcaggcaggaaactttatt |
319 |
Q |
| |
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|||||| | |||||||||||| | |||||||| ||||||||||||| | || |||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
26671247 |
gaacaaataatggcaacataccacgccttgaacatctaagattgtggtactggaatctatgtgcctcttggaagcaattgtgcaagcaggaaacttaatc |
26671346 |
T |
|
| Q |
320 |
gcatgcatttcctcgcacctctgtgcgtggtacttcacatatctatcaatagttgtaacttgcataagtttgtttcgatccagtttttcaaatctttcga |
419 |
Q |
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||| || ||| || || | |||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||| ||| |||||| | |
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| T |
26671347 |
gcaaaagatttctcaaactcgcgtacatggtacttcacatatctatccatagttgtaacttgcataagtttgtttggatccacttttccaagtctttcaa |
26671446 |
T |
|
| Q |
420 |
tgaaaacaggtcttccctccttatcaacaccatgatagccatgtggattatacttaataacttcat |
485 |
Q |
| |
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|| ||||||| ||||||||||||||||||||||||| |||||||||| |||||||| |||||||| |
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|
| T |
26671447 |
tgtaaacaggccttccctccttatcaacaccatgatgcccatgtggataatacttaacaacttcat |
26671512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 232 - 485
Target Start/End: Original strand, 26658146 - 26658399
Alignment:
| Q |
232 |
gcaacatacgatgccttgaagatctaagattgtgatgcttgaatctatgtgcctcttggaagcaattgtgcaggcaggaaactttattgcatgcatttcc |
331 |
Q |
| |
|
||||||||| |||||||||| ||| | |||| || | |||||||||||| ||||||||||||||||||||| ||||||||||||| ||| || | | |
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|
| T |
26658146 |
gcaacataccatgccttgaacatcgatgattttggttattgaatctatgttcctcttggaagcaattgtgcatgcaggaaactttaccgcaaacaatatc |
26658245 |
T |
|
| Q |
332 |
tcgcacctctgtgcgtggtacttcacatatctatcaatagttgtaacttgcataagtttgtttcgatccagtttttcaaatctttcgatgaaaacaggtc |
431 |
Q |
| |
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|| | ||||||| |||||||||||||||||| ||||||| ||||||||||||||| ||| ||||| |||| ||| | |||| ||||||||||| | |
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|
| T |
26658246 |
tccccgtcctgtgcggagtacttcacatatctatctatagttgcaacttgcataagtttatttggatccgcttttccaagtttttcaatgaaaacaggcc |
26658345 |
T |
|
| Q |
432 |
ttccctccttatcaacaccatgatagccatgtggattatacttaataacttcat |
485 |
Q |
| |
|
|||| | ||||||||||||||| || |||||||||| |||||| | |||||||| |
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|
| T |
26658346 |
ttcctttcttatcaacaccatggtatccatgtggataatacttgacaacttcat |
26658399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 26643387 - 26643489
Alignment:
| Q |
216 |
tgaagaacaattcatggcaacatacgatgccttgaagatctaagattgtgatgcttgaatctatgtgcctcttggaagcaattgtgcaggcaggaaactt |
315 |
Q |
| |
|
||||||||||||||||| ||||||| | | |||||| |||||||||| || || |||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
26643387 |
tgaagaacaattcatggtaacataccacggcttgaacatctaagattatggtgaatgaatctatgagcctcttggaagcaattgtgcaagcaggaaactt |
26643486 |
T |
|
| Q |
316 |
tat |
318 |
Q |
| |
|
||| |
|
|
| T |
26643487 |
tat |
26643489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 466
Target Start/End: Original strand, 26643522 - 26643565
Alignment:
| Q |
423 |
aaacaggtcttccctccttatcaacaccatgatagccatgtgga |
466 |
Q |
| |
|
||||||| ||||| ||||||||||| |||||||||||||||||| |
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|
| T |
26643522 |
aaacaggccttccttccttatcaacgccatgatagccatgtgga |
26643565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 7e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 245 - 485
Target Start/End: Original strand, 54780840 - 54781080
Alignment:
| Q |
245 |
ccttgaagatctaagattgtgatgcttgaatctatgtgcctcttggaagcaattgtgcaggcaggaaactttattgcatgcatttcctcgcacctctgtg |
344 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| | |||||| ||||| |||||||||||||||||| || ||| || || |
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|
| T |
54780840 |
ccttgaacatctaagattgtggtgcttgaatctatgtgcctctttgcagcaatagtgcaagcaggaaactttattgcaaaagatttctcaaactcttgca |
54780939 |
T |
|
| Q |
345 |
cgtggtacttcacatatctatcaatagttgtaacttgcataagtttgtttcgatccagtttttcaaatctttcgatgaaaacaggtcttccctccttatc |
444 |
Q |
| |
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| |||||||| ||||||||||| ||||||||||| ||||| |||||||| |||| | |||| ||| |||||| || ||||||| ||||| |||||||| |
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|
| T |
54780940 |
catggtactttacatatctatccatagttgtaacctgcatcagtttgttcggatcaacttttccaagtctttcaatataaacaggccttccttccttatc |
54781039 |
T |
|
| Q |
445 |
aacaccatgatagccatgtggattatacttaataacttcat |
485 |
Q |
| |
|
|||||||||| ||||||||||| |||||| | |||||||| |
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|
| T |
54781040 |
tacaccatgatggccatgtggataatacttcacaacttcat |
54781080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 423 - 467
Target Start/End: Original strand, 52489457 - 52489501
Alignment:
| Q |
423 |
aaacaggtcttccctccttatcaacaccatgatagccatgtggat |
467 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||| |
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|
| T |
52489457 |
aaacaggtcttccctccttatccacaccatgataaccatgtggat |
52489501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 455
Target Start/End: Complemental strand, 54772852 - 54772807
Alignment:
| Q |
410 |
aatctttcgatgaaaacaggtcttccctccttatcaacaccatgat |
455 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||||||||||| ||||||| |
|
|
| T |
54772852 |
aatctttcaatgtaaacaggtcttccatccttatcaactccatgat |
54772807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 423 - 467
Target Start/End: Original strand, 7209923 - 7209967
Alignment:
| Q |
423 |
aaacaggtcttccctccttatcaacaccatgatagccatgtggat |
467 |
Q |
| |
|
||||||||||||| || ||||||||||||||||| |||||||||| |
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|
| T |
7209923 |
aaacaggtcttccttctttatcaacaccatgataaccatgtggat |
7209967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 410 - 488
Target Start/End: Complemental strand, 5326688 - 5326610
Alignment:
| Q |
410 |
aatctttcgatgaaaacaggtcttccctccttatcaacaccatgatagccatgtggattatacttaataacttcatcta |
488 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||||||||||| ||||||| || ||||||| || || | ||||||||||| |
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|
| T |
5326688 |
aatctttcaatgtaaacaggtcttccatccttatcaactccatgatgtccttgtggatagtattttagaacttcatcta |
5326610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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