View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12222_high_5 (Length: 250)
Name: NF12222_high_5
Description: NF12222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12222_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 24 - 230
Target Start/End: Complemental strand, 22040966 - 22040768
Alignment:
| Q |
24 |
atccttgtcatccacctacaatcatctatgccaccctataaaagaagaaacaacatagacatacattttcttcccatcagtgtgcaaataaagaaatatg |
123 |
Q |
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| T |
22040966 |
atccttgtcatccacctacaatcatctatgccaccctataaaagaagaaacaa----gacatacattttcttcccatcagtgtgcaaataaagaaatata |
22040871 |
T |
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| Q |
124 |
gaaaacatgtgatagttaggcatgaggaatcctatgagtcactcactcactcatgacaacaactttggtctatagctacacaatatgcttgatcatgaaa |
223 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| | | ||||||||| ||||||||||| |
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| T |
22040870 |
gaaaacatctgatggttaggcatgaggaatcctatgagtcactca----ctcatgacaacaactttgatctataacgatacaatatgcctgatcatgaaa |
22040775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 25328043 - 25328168
Alignment:
| Q |
24 |
atccttgtcatccacctacaatcatctat----gccaccctataaaagaagaaacaacatagacatacattttcttcccatcagtgtgcaaataaagaaa |
119 |
Q |
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|||| |||||| || |||||||||||||| |||| |||||||||||||||| ||||||| |||||||||||| |||||| |||||||||||||||| |
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| T |
25328043 |
atccctgtcattcaactacaatcatctattaatgccatcctataaaagaagaaaaaacataggaatacattttctttccatca-tgtgcaaataaagaaa |
25328141 |
T |
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| Q |
120 |
tatggaaaacatgtgatagttaggcat |
146 |
Q |
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| T |
25328142 |
tgtggaaaacatgtgatagctaggcat |
25328168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 230
Target Start/End: Original strand, 22004571 - 22004738
Alignment:
| Q |
51 |
atgccaccctataaaagaagaaacaacatagacatacattttcttcccatcagtgtgcaaataaagaaatatggaaaacatgtgatagttaggcatgagg |
150 |
Q |
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|||||||||||||||| |||||||||||||| ||| |||||| | |||| ||||||||||||| |||| |||||||| || | || | ||||||| | |
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| T |
22004571 |
atgccaccctataaaacaagaaacaacataggcattcatttttt--ccatgagtgtgcaaataaggaaacatggaaaagatataatggctaggcatca-- |
22004666 |
T |
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| Q |
151 |
aatcctatgagtcactcactcactcatgacaacaactttggtctatagctacacaatatgcttgatcatgaaactttaat |
230 |
Q |
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|||||||||| |||||||| ||||||||||||| | ||||| | |||||||||||||||||||||||||||| |
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| T |
22004667 |
-------tgagtcactc-ctcactcaagacaacaactttgagccatagccatacaatatgcttgatcatgaaactttaat |
22004738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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