View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12222_high_6 (Length: 242)
Name: NF12222_high_6
Description: NF12222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12222_high_6 |
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| [»] scaffold0163 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 22208645 - 22208879
Alignment:
| Q |
1 |
cattatcagcacaatatttatgaaacactgtattgttgtattcacacccattatcacattgaaaacatttgacagtttgggaaaattgtgtgcgaatttg |
100 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22208645 |
cattatcagtacaatatttatgaaacaatgtattgttgtattcacacccattatcacattgaaaacatttgacagtttgggaaaattgtgtgcgaatttg |
22208744 |
T |
|
| Q |
101 |
attagaaagtgtagtgaacatttcaaaaacttgagatttgtgacttatagggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataataa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
22208745 |
attagaaagtgtagtgaacatttcaaaaacttgagatttgtaacttatagggaacatccacaaaatatcagaataatcatccaaaaataaaatataatac |
22208844 |
T |
|
| Q |
201 |
cgatgaccagaggtgcttaaaattggtgatgtcca |
235 |
Q |
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||||||||||||| |||||||| ||||||||||| |
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| T |
22208845 |
tgatgaccagaggtacttaaaatcggtgatgtcca |
22208879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 23582105 - 23581870
Alignment:
| Q |
1 |
cattatcagcacaatatttatgaaacactgtattgttgtattcacacccattatcacattgaaaacatttgacagtttgggaaaattgtgtgcgaatttg |
100 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||| |||||||||||| ||||||| |
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| T |
23582105 |
cattatcaacacaatatttatgaaacaatgtattgttgtattcacgccctttatcacattgaaaacatttgatagtttgcgaaaattgtgtgtgaatttg |
23582006 |
T |
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| Q |
101 |
attagaaagtgtagtgaacatttcaaaaacttgagatttgtgacttatagggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataataa |
200 |
Q |
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| T |
23582005 |
attagaaagtgtagtaaacatttcaaaaacttgagatttgtgatttatagggaacgtccacaaaaaatcataataatcatcaaaaaataaaacataatac |
23581906 |
T |
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| Q |
201 |
cgatgaccagaggtgcttaaaattggtgatgtccat |
236 |
Q |
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| T |
23581905 |
cgatgaccagaggtgcttaaaatcggcgatgtccat |
23581870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 48101681 - 48101916
Alignment:
| Q |
1 |
cattatcagcacaatatttatgaaacactgtattgttgtattcacacccattatcacattgaaaacatttgacagtttgggaaaattgtgtgcgaatttg |
100 |
Q |
| |
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|||||||| ||||||| |||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
48101681 |
cattatcatcacaatacttatgaaatgatgtattattatattcacgcccattatcacattgaaaacatttgacagtttgagaaaattgtgtgtgaatttg |
48101780 |
T |
|
| Q |
101 |
attagaaagtgtagtgaacatttcaaaaacttgagatttgtgacttatagggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataataa |
200 |
Q |
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||| |||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48101781 |
attggaaagtaatgtgaacatttcaaaaacttgtgatttgttacttatagggaatgtccacaaaaaatcagaataatcatccaaaaataaaacataatac |
48101880 |
T |
|
| Q |
201 |
cgatgaccagaggtgcttaaaattggtgatgtccat |
236 |
Q |
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|||||||||||||| |||||||| ||||| |||||| |
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| T |
48101881 |
cgatgaccagaggtacttaaaatcggtgaagtccat |
48101916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 236
Target Start/End: Complemental strand, 33285085 - 33284999
Alignment:
| Q |
150 |
gggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataataacgatgaccagaggtgcttaaaattggtgatgtccat |
236 |
Q |
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||||| ||||||||||||| |||||| | ||||||||||||||||||||| ||||| | | |||||||||||| ||||||||| |
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| T |
33285085 |
gggaatgtccacaaaaaattagaatagttatccaaaaataaaacataatatttgtgacctgtcgagcttaaaattggagatgtccat |
33284999 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 9934399 - 9934634
Alignment:
| Q |
1 |
cattatcagcacaatatttatgaaacactgtattgttgtattcacacccattatcacattgaaaacatttgacagtttgggaaaattgtgtgcgaatttg |
100 |
Q |
| |
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|||||||| ||||||| |||||||| |||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
9934399 |
cattatcatcacaatacttatgaaatgatgtattattatattcacgcccattatcacattgaaaacatttgacagtttgagaaaattgtgtgtgaatttg |
9934498 |
T |
|
| Q |
101 |
attagaaagtgtagtgaacatttcaaaaacttgagatttgtgacttatagggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataataa |
200 |
Q |
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||| |||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9934499 |
attggaaagtaatgtgaacatttcaaaaacttgtgatttgttacttatagggaatgtccacaaaaaatcagaataatcatccaaaaataaaacataatac |
9934598 |
T |
|
| Q |
201 |
cgatgaccagaggtgcttaaaattggtgatgtccat |
236 |
Q |
| |
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|||||||||||||| |||||||| ||||| |||||| |
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| T |
9934599 |
cgatgaccagaggtacttaaaatcggtgaagtccat |
9934634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 4703884 - 4703652
Alignment:
| Q |
4 |
tatcagcacaatatttatgaaacactgtattgttgtattcacacccattatcacattgaaaacatttgacagtttgggaaaattgtgtgcgaatttgatt |
103 |
Q |
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||||| |||||||||||||||| | || ||| || |||||| ||||||||||||| |||||||||| ||| |||| ||||||||||| |||||||||| |
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| T |
4703884 |
tatcaacacaatatttatgaaatagtgaattattatattcatgcccattatcacatcgaaaacatttaacaatttgagaaaattgtgtatgaatttgatt |
4703785 |
T |
|
| Q |
104 |
agaaagtgtagtgaacatttcaaaaacttgagatttgtgacttatagggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataataacga |
203 |
Q |
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||||||| | | |||||||||||||||| ||| | | |||| ||| || ||||||||||||||||||||||||||||| ||||||| |||||| | | |
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| T |
4703784 |
ggaaagtgaaattaacatttcaaaaacttaagactccttgcttacaggaaatgtccacaaaaaatcagaataatcatccaagaataaaatataataccaa |
4703685 |
T |
|
| Q |
204 |
tgaccagaggtgcttaaaattggtgatgtccat |
236 |
Q |
| |
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|||||||||| |||||||| ||| ||| ||||| |
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| T |
4703684 |
tgaccagaggagcttaaaactggcgatatccat |
4703652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 150 - 236
Target Start/End: Original strand, 16659183 - 16659269
Alignment:
| Q |
150 |
gggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataataacgatgaccagaggtgcttaaaattggtgatgtccat |
236 |
Q |
| |
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||||| ||||||||||||| |||||| | ||||||||||||||||||||| ||||| | | |||||||||||| ||||||||| |
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| T |
16659183 |
gggaatgtccacaaaaaattagaatagttatccaaaaataaaacataatatttgtgacctgtcgagcttaaaattggagatgtccat |
16659269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 33409 - 33458
Alignment:
| Q |
150 |
gggaacgtccacaaaaaatcagaataatcatccaaaaataaaacataata |
199 |
Q |
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||||| ||||||||||||| |||| | | ||||||||||||||||||||| |
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| T |
33409 |
gggaatgtccacaaaaaattagaacagttatccaaaaataaaacataata |
33458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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