View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12222_low_1 (Length: 387)
Name: NF12222_low_1
Description: NF12222
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12222_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 387
Target Start/End: Complemental strand, 40656241 - 40655870
Alignment:
| Q |
16 |
aatagcagcacttgatacaatgctattataaacaaatcccaccttaaaacaaaaggcaaaaacttgcttacccttctccaaatctcgcaagttggaacaa |
115 |
Q |
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| T |
40656241 |
aatagcagcacttgatacaatgctattataaacaaatcccaccttaaaacaaaaggcaaaaacttgcttacccttctccaaatctcgcaagttggaacaa |
40656142 |
T |
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| Q |
116 |
acactcatcaatgttgaacacgtaaactcatcaggcaacaactccgcagctttcatgcaacaaaactgctcaagagcaagctcttgtcgcccggctctat |
215 |
Q |
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| T |
40656141 |
acactcatcaatgttgaacacgtaaactcatcaggcaacaactccgcagctttcatgcaacaaaactgctcaagagcaagctcttgtcgcccggctctat |
40656042 |
T |
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| Q |
216 |
gacaggcccatatcaaagagttccaagatataacatcaagctgcttcatactcaaaatcacgccaaaacaataatcaacaagatcaaacttcccatacat |
315 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40656041 |
gacaagcccatatcaaagagttccaagatataaaatcaagctgcttcatactcaaaatcacgccaaaacaataatcaacaagatcaaacttcccatacat |
40655942 |
T |
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| Q |
316 |
agctatcaacgaatttccaatcaccacattagacaattccatcccacttctaatcatcataccatgaacctc |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40655941 |
agctatcaacgaatttccaatcaccacattagacaattccatcccacttctaatcatcataccatgaacctc |
40655870 |
T |
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