View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12223_high_4 (Length: 370)

Name: NF12223_high_4
Description: NF12223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12223_high_4
NF12223_high_4
[»] chr1 (8 HSPs)
chr1 (25-283)||(1944583-1944841)
chr1 (295-354)||(1944543-1944602)
chr1 (25-80)||(15088267-15088322)
chr1 (25-80)||(22207312-22207367)
chr1 (25-80)||(22210875-22210930)
chr1 (19-107)||(51843943-51844032)
chr1 (25-80)||(22219625-22219680)
chr1 (25-80)||(7898996-7899051)
[»] chr8 (5 HSPs)
chr8 (25-202)||(25003882-25004069)
chr8 (25-108)||(20811014-20811098)
chr8 (24-107)||(25336130-25336214)
chr8 (25-102)||(4844424-4844502)
chr8 (19-102)||(5557124-5557208)
[»] chr3 (8 HSPs)
chr3 (25-108)||(2747069-2747153)
chr3 (28-107)||(18111100-18111180)
chr3 (29-114)||(7782843-7782929)
chr3 (25-86)||(14521666-14521727)
chr3 (19-102)||(19359870-19359954)
chr3 (25-107)||(5835282-5835365)
chr3 (25-107)||(28034344-28034427)
chr3 (25-80)||(37489380-37489435)
[»] chr2 (8 HSPs)
chr2 (32-118)||(29742295-29742382)
chr2 (25-121)||(38211354-38211451)
chr2 (25-107)||(31347380-31347463)
chr2 (25-203)||(33119048-33119234)
chr2 (25-86)||(29747151-29747212)
chr2 (25-85)||(18010917-18010977)
chr2 (28-107)||(31314654-31314734)
chr2 (25-121)||(33125368-33125464)
[»] chr4 (6 HSPs)
chr4 (25-107)||(1505345-1505428)
chr4 (25-107)||(24627364-24627447)
chr4 (25-77)||(1604726-1604778)
chr4 (25-72)||(3329495-3329542)
chr4 (25-79)||(5599257-5599311)
chr4 (39-146)||(11042095-11042203)
[»] chr6 (3 HSPs)
chr6 (25-107)||(5131335-5131418)
chr6 (25-80)||(31113654-31113709)
chr6 (25-79)||(33301152-33301206)
[»] chr5 (5 HSPs)
chr5 (25-115)||(22301889-22301980)
chr5 (28-102)||(23213637-23213713)
chr5 (19-102)||(41527878-41527962)
chr5 (30-141)||(19209949-19210060)
chr5 (25-85)||(26075659-26075719)
[»] scaffold0046 (1 HSPs)
scaffold0046 (25-107)||(89846-89929)
[»] chr7 (5 HSPs)
chr7 (88-147)||(6454566-6454625)
chr7 (25-107)||(19802254-19802337)
chr7 (25-107)||(21959205-21959288)
chr7 (40-86)||(20920356-20920402)
chr7 (25-77)||(3737889-3737941)
[»] scaffold0158 (1 HSPs)
scaffold0158 (25-86)||(8-69)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 25 - 283
Target Start/End: Complemental strand, 1944841 - 1944583
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatcgggatcctatgatcgccatatgtttgtacatatacatagtc 124  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1944841 attggggtgagaccggatgtcttagtgagttccacctttcctaggttgtaggcaatatcgggatcctatgatcgccatatgtctgtacatatacatagtc 1944742  T
Q  125 ttgggtttactgttttgtcatgcgtatcg--------tggggaagtttaggatcactgactgtatactatcataaatcttgtcatattgtcatattcgta 216  Q
    |||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  1944741 ttgggtttactgttttgtcatgcgtatcgtagcgatatggggaagtttaggatcactgactgtatactatcataaatc--------ttgtcatattcgta 1944650  T
Q  217 tcatatctttcatatacataattataatgttagcgtgggacaaacacattatctgagttcattttac 283  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1944649 tcatatctttcatatacataattataatgttagcgtgggacaaacacattatctgagttcattttac 1944583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 1944602 - 1944543
Alignment:
Q  295 attatctgagttcattttacatagtgcacattatcttgtcactgctgaccggcaaaaata 354  Q
    ||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||    
T  1944602 attatctgagttcattttacggagtgcacattagcttgtcactgctgaccggcaaaaata 1944543  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 15088267 - 15088322
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaat 80  Q
    ||||||||||||| |||||||| |||||||||||||| || |||||||||||||||    
T  15088267 attggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaat 15088322  T

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Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 22207312 - 22207367
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaat 80  Q
    ||||||||||||| |||||||| |||||||||||||| || |||||||||||||||    
T  22207312 attggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaat 22207367  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 22210875 - 22210930
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaat 80  Q
    ||||||||||||| |||||||| |||||||||||||| || |||||||||||||||    
T  22210875 attggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaat 22210930  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 51843943 - 51844032
Alignment:
Q  19 aaaacaattggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtt 107  Q
    |||| ||||||||||||||  ||||||| |||||||||||||| ||||| | |||||||||| || |||| |||| ||||| ||||||||    
T  51843943 aaaataattggggtgagacatgatgtctcagtgagttccacctatcttaaggtgtaggcaatctcagggaccctaagatcgtcatatgtt 51844032  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 22219625 - 22219680
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaat 80  Q
    ||||||||||||| |||||||| |||||||| ||||| || |||||||||||||||    
T  22219625 attggggtgagacaggatgtctcagtgagttgcacctatcctaggttgtaggcaat 22219680  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 7898996 - 7899051
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaat 80  Q
    |||||||||||||  ||||||| |||||||||||||| || ||| |||||||||||    
T  7898996 attggggtgagacaagatgtctcagtgagttccacctatcctagattgtaggcaat 7899051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 25 - 202
Target Start/End: Complemental strand, 25004069 - 25003882
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc--gggatcctatgatcgccatatgtttgtacatatacatag 122  Q
    ||||||||||||| | |||||| |||||||||||||| || |||| |||||||||| ||  || | |||||||||| |||  ||||||| ||| |||||     
T  25004069 attggggtgagacagaatgtctcagtgagttccacctatcctaggctgtaggcaatctcagggaaacctatgatcgtcattcgtttgtatataaacataa 25003970  T
Q  123 tcttgggtttactgttttgtcatgcgtatcg--------tggggaagtttaggatcactgactgtatactatcataaatcttgtcata 202  Q
    ||| ||||||||| ||||| ||||| |||||        |||||||   ||||||| ||||| |||||||||||||||||||||||||    
T  25003969 tctagggtttactattttgacatgcttatcgtagcgatatggggaatactaggatcgctgacagtatactatcataaatcttgtcata 25003882  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 20811098 - 20811014
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgttt 108  Q
    ||||||||||||| | |||||| |||||||||||||| || ||||||||||||||| || | || |||| ||||||||| |||||    
T  20811098 attggggtgagacagaatgtctcagtgagttccacctatcctaggttgtaggcaatctcagtgaacctaggatcgccatctgttt 20811014  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 107
Target Start/End: Original strand, 25336130 - 25336214
Alignment:
Q  24 aattggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtt 107  Q
    |||||||||||||| |||||||  |||||||||||||| || |||| | |||||||| || |||| |||| ||||||||||||||    
T  25336130 aattggggtgagacaggatgtcccagtgagttccacctatcctaggctataggcaatctcagggaacctaggatcgccatatgtt 25336214  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 4844502 - 4844424
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccat 102  Q
    ||||||||||||| ||||| |  |||||||||||||| || ||||||||||||||| || |||| |||| |||||||||    
T  4844502 attggggtgagacaggatgccgcagtgagttccacctatcctaggttgtaggcaatctcagggaacctaggatcgccat 4844424  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 5557124 - 5557208
Alignment:
Q  19 aaaacaattggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccat 102  Q
    |||| ||||||||||||||   |||||| |||||||||||||| || |||| |||||||||| || |||| |||| |||||||||    
T  5557124 aaaagaattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctaggatcgccat 5557208  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 2747153 - 2747069
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgttt 108  Q
    ||||||||||||| |||||||| |||||||||||||| || ||||||||||||||| || |||| |||| |||||||||||||||    
T  2747153 attggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatctcagggaacctaggatcgccatatgttt 2747069  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 18111100 - 18111180
Alignment:
Q  28 ggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtt 107  Q
    ||||||||||  ||||||| |||||||||||||| || |||||||||||||||||| |||| |||| ||||||||| ||||    
T  18111100 ggggtgagacatgatgtctcagtgagttccacctatcctaggttgtaggcaatatcagggaacctaggatcgccatctgtt 18111180  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 114
Target Start/End: Original strand, 7782843 - 7782929
Alignment:
Q  29 gggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtttgtacat 114  Q
    |||||||||  |||||||||||||||||||||| || || | | |||||||| || |||| ||||||||| |||| |||||||||||    
T  7782843 gggtgagacacgatgtcttagtgagttccacctatcctaagctataggcaatctcggggaacctatgatcaccatttgtttgtacat 7782929  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 14521727 - 14521666
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatcggg 86  Q
    |||||||||||||   ||||||||||||||||||||| || |||| |||||||||| |||||    
T  14521727 attggggtgagacaaaatgtcttagtgagttccacctatcctaggctgtaggcaatctcggg 14521666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 19359954 - 19359870
Alignment:
Q  19 aaaacaattggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccat 102  Q
    |||| ||||||||||||||   |||||| |||||||||||||| || |||| |||||||||| || |||| |||| |||||||||    
T  19359954 aaaagaattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctaggatcgccat 19359870  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 5835282 - 5835365
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtt 107  Q
    ||||||||||||  |||||||| |||||||||||||| || |||| | |||||||| || |||| |||| ||||| ||||||||    
T  5835282 attggggtgagataggatgtctcagtgagttccacctatcctaggctataggcaatctcagggaacctaggatcgtcatatgtt 5835365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 28034344 - 28034427
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtt 107  Q
    |||||||||||||  ||||||| ||||| |||||||| || |||||||| |||||| ||  ||| |||| ||||||||||||||    
T  28034344 attggggtgagacaagatgtctcagtgaattccacctatcctaggttgttggcaatctcaaggaacctaggatcgccatatgtt 28034427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 37489380 - 37489435
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaat 80  Q
    |||||||||||||  |||||||  ||||||||||||| || |||||||||||||||    
T  37489380 attggggtgagacaagatgtctcggtgagttccacctatcctaggttgtaggcaat 37489435  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 29742295 - 29742382
Alignment:
Q  32 tgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtttgtacatatac 118  Q
    |||||| |||| ||| |||||||||||||| | |||||||||||||||| || |||| |||||||||||||| |||||||||||||||    
T  29742295 tgagacgggatatctcagtgagttccacctattttaggttgtaggcaatctcagggaacctatgatcgccatctgtttgtacatatac 29742382  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 38211354 - 38211451
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaat-atcgggatcctatgatcgccatatgtttgtacatatacata 121  Q
    ||||||||||||| |||| ||| |||||||||||||| || || ||||||||||||  | |||| |||||||||||||||||| ||||||| ||||||    
T  38211354 attggggtgagacaggatctctcagtgagttccacctatcctaagttgtaggcaatcttggggagcctatgatcgccatatgtgtgtacatgtacata 38211451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 31347463 - 31347380
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtt 107  Q
    ||||||||||||| |||||||| |||||||||||||| || ||||||||||||||| || | || |||| ||||||||||||||    
T  31347463 attggggtgagacaggatgtctcagtgagttccacctatcctaggttgtaggcaatctcagagaacctaggatcgccatatgtt 31347380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 25 - 203
Target Start/End: Complemental strand, 33119234 - 33119048
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatcgggatcctatgatcgccatatgtttgtacatatacatagtc 124  Q
    |||||||||||||  |||||||||||||||||||| | || |||  | |||||||| | || | |||||||||| ||| | |||||||||| ||||| |     
T  33119234 attggggtgagacatgatgtcttagtgagttccacttatcctagactataggcaatcttggaaacctatgatcgtcatttatttgtacataaacataatt 33119135  T
Q  125 ttgggtttactgttttgtcatgc-----gtatcg---tggggaagtttaggatcactgactgtatactatcataaatcttgtcatat 203  Q
    | ||||||  |||| | |  |||     ||||||   ||||||||| |||||||| |||| |||||||||||||| |||||||||||    
T  33119134 tagggtttgttgttctattttgcacatcgtatcgatctggggaagtctaggatcattgacagtatactatcataattcttgtcatat 33119048  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 86
Target Start/End: Original strand, 29747151 - 29747212
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatcggg 86  Q
    ||||||||||||| |||||||| |||||||||||| | || |||||||||||| || |||||    
T  29747151 attggggtgagacaggatgtctcagtgagttccacatatcctaggttgtaggcgatctcggg 29747212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 18010917 - 18010977
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatcgg 85  Q
    ||||||||||||| |||||||| |||||||||||||| || |||| || ||||||| ||||    
T  18010917 attggggtgagacaggatgtctcagtgagttccacctatcctaggctgcaggcaatctcgg 18010977  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 107
Target Start/End: Original strand, 31314654 - 31314734
Alignment:
Q  28 ggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtt 107  Q
    ||||||||||  ||||| | |||||||||||||| || ||||||||||||||| || |||| |||| ||||||||| ||||    
T  31314654 ggggtgagacatgatgtttcagtgagttccacctatcctaggttgtaggcaatctcagggaacctaggatcgccatctgtt 31314734  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 33125464 - 33125368
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatcgggatcctatgatcgccatatgtttgtacatatacata 121  Q
    |||||||||||||  |||||||||||||||||||||| || |||  ||||||| || | || | |||||||| | ||| | |||||||||| |||||    
T  33125464 attggggtgagacatgatgtcttagtgagttccacctatcctagactgtaggcgatcttggaaacctatgattgtcatttatttgtacataaacata 33125368  T

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Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 1505345 - 1505428
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtt 107  Q
    |||||||||||||  |||||||||||||||||||||| || ||||||||||||||| || |||| |||| ||||||||| ||||    
T  1505345 attggggtgagacaagatgtcttagtgagttccacctatcctaggttgtaggcaatctcagggaacctaggatcgccatctgtt 1505428  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 24627364 - 24627447
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtt 107  Q
    |||||||||| ||  ||||||| || ||||||||||| || |||| |||||||||| || |||| |||||||||||||||||||    
T  24627364 attggggtgacacatgatgtctcagcgagttccacctatcctaggatgtaggcaatctcagggaacctatgatcgccatatgtt 24627447  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 1604778 - 1604726
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggc 77  Q
    ||||||||||||| ||| |||| |||||||||||||| || ||||||||||||    
T  1604778 attggggtgagacaggaggtctcagtgagttccacctatcctaggttgtaggc 1604726  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 3329542 - 3329495
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttg 72  Q
    |||||||||||||  ||||||| |||||||||||||| ||||||||||    
T  3329542 attggggtgagacaagatgtctcagtgagttccacctatcttaggttg 3329495  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 5599257 - 5599311
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaa 79  Q
    |||||||||||||  ||||||| ||||||||||| || || ||||||||||||||    
T  5599257 attggggtgagacaagatgtctcagtgagttccatctatcctaggttgtaggcaa 5599311  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 146
Target Start/End: Complemental strand, 11042203 - 11042095
Alignment:
Q  39 ggatgtcttagtgagttccacctttcttaggttgtaggcaatatcggg-atcctatgatcgccatatgtttgtacatatacatagtcttgggtttactgt 137  Q
    |||||||| ||||||||| || | ||||||| | |||||||| ||||  | ||||  ||| ||||||||||||||||||||||| ||  | ||||||| |    
T  11042203 ggatgtctcagtgagttctacttgtcttaggctataggcaatctcggataacctacaatcaccatatgtttgtacatatacataatcaagagtttactat 11042104  T
Q  138 tttgtcatg 146  Q
    | |||||||    
T  11042103 tatgtcatg 11042095  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 5131418 - 5131335
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtt 107  Q
    |||||||||||||  ||||||| |||||||||||||| || ||||||||||||||| || |||| |||| ||||||||| ||||    
T  5131418 attggggtgagacaagatgtctcagtgagttccacctatcctaggttgtaggcaatctcggggaacctaggatcgccatctgtt 5131335  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 31113709 - 31113654
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaat 80  Q
    |||||||||||||  ||||||| |||||||||||||| || |||| ||||||||||    
T  31113709 attggggtgagacatgatgtctcagtgagttccacctatcctaggctgtaggcaat 31113654  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 33301206 - 33301152
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaa 79  Q
    |||||||||||||  ||||||| ||||||||||| || || ||||||||||||||    
T  33301206 attggggtgagacaagatgtctcagtgagttccatctatcctaggttgtaggcaa 33301152  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 25 - 115
Target Start/End: Original strand, 22301889 - 22301980
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtttgtacata 115  Q
    |||||| ||||||  |||||||||||||||||||||| || || ||||||||||||  | |||| |||||||||||||| |||  |||||||    
T  22301889 attgggatgagacatgatgtcttagtgagttccacctatcctaagttgtaggcaattgcggggaacctatgatcgccatttgtccgtacata 22301980  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 102
Target Start/End: Original strand, 23213637 - 23213713
Alignment:
Q  28 ggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatcggg--atcctatgatcgccat 102  Q
    ||||||||||   ||||||||||||||||||||| || |||||| |||||||| |||||  | ||||||||||||||    
T  23213637 ggggtgagacattatgtcttagtgagttccacctatcctaggttttaggcaatctcggggaaacctatgatcgccat 23213713  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 41527878 - 41527962
Alignment:
Q  19 aaaacaattggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccat 102  Q
    |||| ||||||||||||||   |||||| |||||||||||||| || |||| |||||||||| || |||| |||| |||||||||    
T  41527878 aaaagaattggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctaggatcgccat 41527962  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 141
Target Start/End: Original strand, 19209949 - 19210060
Alignment:
Q  30 ggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatcgg-gatcctatgatcgccatatgtttgtacatatacatagtcttgg 128  Q
    ||||||||  ||||||| |||||||| ||||| |  ||||||||||| ||| |||| || | | |||||||||| ||| |||||||| ||  ||||| ||    
T  19209949 ggtgagacgagatgtctcagtgagtttcacctattctaggttgtaggtaatctcggagaacatttgatcgccatctgtctgtacata-acccagtctagg 19210047  T
Q  129 gtttactgttttg 141  Q
    |||||||||||||    
T  19210048 gtttactgttttg 19210060  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 26075719 - 26075659
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatcgg 85  Q
    ||||||||||||| |||||| | |||||||||||||  || || |||||||||||| ||||    
T  26075719 attggggtgagacaggatgtatcagtgagttccaccaatcctatgttgtaggcaatctcgg 26075659  T

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Target: scaffold0046 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0046
Description:

Target: scaffold0046; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 89846 - 89929
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaat-atcgggatcctatgatcgccatatgtt 107  Q
    ||||| |||||||  ||||||| |||||||||||||| || |||| |||||||||| |  |||| |||| ||||||||||||||    
T  89846 attggagtgagacaagatgtctcagtgagttccacctatcctaggctgtaggcaatcacagggaacctaggatcgccatatgtt 89929  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 147
Target Start/End: Complemental strand, 6454625 - 6454566
Alignment:
Q  88 tcctatgatcgccatatgtttgtacatatacatagtcttgggtttactgttttgtcatgc 147  Q
    |||||||| |||||||||| |||||||| ||||| ||| |||||||||||| ||| ||||    
T  6454625 tcctatgaccgccatatgtctgtacataaacataatctagggtttactgttctgttatgc 6454566  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 107
Target Start/End: Original strand, 19802254 - 19802337
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtt 107  Q
    |||||||||||||   |||||| |||||||||||||| || |||| |||||||||| || |||| |||| ||||||||| ||||    
T  19802254 attggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctacgatcgccatctgtt 19802337  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 21959288 - 21959205
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatc-gggatcctatgatcgccatatgtt 107  Q
    |||||||||||||   |||||| |||||||||||||| || |||| |||||||||| || |||| |||| ||||||||| ||||    
T  21959288 attggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggggaacctaggatcgccatttgtt 21959205  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 20920402 - 20920356
Alignment:
Q  40 gatgtcttagtgagttccacctttcttaggttgtaggcaatatcggg 86  Q
    ||||||| |||||||||||||| || ||||||||||||||| |||||    
T  20920402 gatgtctcagtgagttccacctatcctaggttgtaggcaatctcggg 20920356  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 3737941 - 3737889
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggc 77  Q
    |||||||||||||  ||||||| |||||||||||||| |  ||||||||||||    
T  3737941 attggggtgagacatgatgtctcagtgagttccacctattctaggttgtaggc 3737889  T

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Target: scaffold0158 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 69 - 8
Alignment:
Q  25 attggggtgagaccggatgtcttagtgagttccacctttcttaggttgtaggcaatatcggg 86  Q
    |||||||||||||   |||||| |||||||||||||| || |||| |||||||||| |||||    
T  69 attggggtgagacaaaatgtctcagtgagttccacctatcctaggctgtaggcaatctcggg 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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