View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12223_high_7 (Length: 324)
Name: NF12223_high_7
Description: NF12223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12223_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 21 - 313
Target Start/End: Original strand, 54472607 - 54472899
Alignment:
| Q |
21 |
taatttgttcaaatcatttgttaaaaggctagttgtatatgttgagtatgtcttataatgctaataagtgggagagtcaattaagcgaagcgagagtgac |
120 |
Q |
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| T |
54472607 |
taatttgttcaaatcatttgttaaaaggctagttgtatatgttgagtatgtgttataatgctaataagtgggagagtcaattaagcgaagcgagagtgac |
54472706 |
T |
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| Q |
121 |
atgcctttttgaaccaacacagttacacgaaggtaagttgcgtggggtgattaggggcgcgggtttgaagcctgaaccgtaatatataaatacaagttgt |
220 |
Q |
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| T |
54472707 |
atgcctttttgaaccaacacagttacacgaaggtaagttgcgaggggtgattagggacgcgggtttgaagcctgaaccgtaatatataaatacaagttgt |
54472806 |
T |
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| Q |
221 |
acaatttaaatcctaatcttttaagatgacgatgatagaaaggaactgcacaattggtataactttgttaccaaacatatgtgttctctgctt |
313 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54472807 |
acaatttaaatcctattcttttaagatgacgatgatagaaaggaactgcacaattggtataactttgttaccaaacatatgtgttctctgctt |
54472899 |
T |
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