View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12223_high_9 (Length: 280)
Name: NF12223_high_9
Description: NF12223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12223_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 169 - 270
Target Start/End: Complemental strand, 51225092 - 51224991
Alignment:
| Q |
169 |
ttcaagaattttttgtgcaagaaaagcctcttttttcaataccatcttctcctacttcaggaaatgaagaaattctctctactgtttcttactgcacctt |
268 |
Q |
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| T |
51225092 |
ttcatgaattttttgtgcaagaaaagcctcttttttcaataccatcttctcctacttcaggaaatgaagaaattctctctactgtttcttactgcacctt |
51224993 |
T |
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| Q |
269 |
tg |
270 |
Q |
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|| |
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| T |
51224992 |
tg |
51224991 |
T |
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Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 51225242 - 51225161
Alignment:
| Q |
19 |
ctaagcttcttgttgcaaaggaatctccgtcttcttaccttttaaattgaaactcaaaacacacaagttccttcctgatcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51225242 |
ctaagcttcttgttgcaaaggaatctccgtcttcttaccttttaaattgaaactcaaaacacacaagttccttcctgatcct |
51225161 |
T |
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