View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12223_low_11 (Length: 246)
Name: NF12223_low_11
Description: NF12223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12223_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 34484501 - 34484713
Alignment:
| Q |
20 |
catccggcatgttttgcatgtaatttttcatacgaatcttttgctccttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaat |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34484501 |
catccggcatgttttgcatgtaatttttcattcgaatcttttgctccttctcacgattgtcttgtgtcagctttctcagttgttccctagctttagtaat |
34484600 |
T |
|
| Q |
120 |
ctgctgcaaaagaaaagtttcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagattt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
34484601 |
ctgctgcaaaagaaaagtttcttggttcacattctttttatcatctttcatatatgatttctgatacctctcaagcacctgtttgactccatctagattt |
34484700 |
T |
|
| Q |
220 |
ggccacatctctg |
232 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
34484701 |
ggccacacctctg |
34484713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 47 - 232
Target Start/End: Original strand, 34498627 - 34498812
Alignment:
| Q |
47 |
tcatacgaatcttttgctccttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaatctgctgcaaaagaaaagtttcttggtt |
146 |
Q |
| |
|
|||||||||| || |||| |||||||||||||||||| | |||||||||| || ||||||||||||| |||||| |||||||| ||| |||| ||||| |
|
|
| T |
34498627 |
tcatacgaatgttcagctcattctcacgattgtcttgtctttgctttctcagttggtccctagctttagcaatctgttgcaaaaggaaactttcctggtt |
34498726 |
T |
|
| Q |
147 |
cacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctg |
232 |
Q |
| |
|
|||||| ||| | |||||||||||| |||| ||||||||||||||||||||||||||| || | | ||||||||||||| ||||| |
|
|
| T |
34498727 |
cacattttttctctcatctttcatatatgagttctgatacctctcaatcacctgtttggcttccttcagatttggccacacctctg |
34498812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 231
Target Start/End: Original strand, 37920885 - 37921053
Alignment:
| Q |
63 |
ctccttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaatctgctgcaaaagaaaagtttcttggttcacattctttttatca |
162 |
Q |
| |
|
|||||||||||||||||| || | ||||| ||||||||||| ||||| ||||| |||||| ||||| | |||||||||||||||||| | ||| |
|
|
| T |
37920885 |
ctccttctcacgattgtcgtgcttttgcttttgaagatgttccctggctttgctaatcctctgcaatagaaagctctcttggttcacattctttgtttca |
37920984 |
T |
|
| Q |
163 |
tctttcatagatgatttctgatacctctcaatcacctgttt-gactccatctagatttggccacatctct |
231 |
Q |
| |
|
||||||| ||||| || ||||||||||||||||| ||||| | |||| |||||||||||||||| |||| |
|
|
| T |
37920985 |
tctttcaccgatgaattttgatacctctcaatcacatgtttagcctcc-tctagatttggccacacctct |
37921053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 201
Target Start/End: Original strand, 34520278 - 34520379
Alignment:
| Q |
100 |
tgttccctagctttagtaatctgctgcaaaagaaaagtttcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacct |
199 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||||| ||||||||| |||||| ||||| | | ||| ||| ||| || || |||||||||||||||| |
|
|
| T |
34520278 |
tgttccctggttttagtaatctgttgcaaaagaaaactttcttggtccacattatttttcttgtgtttgatatatgcattttggtacctctcaatcacct |
34520377 |
T |
|
| Q |
200 |
gt |
201 |
Q |
| |
|
|| |
|
|
| T |
34520378 |
gt |
34520379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 9598531 - 9598696
Alignment:
| Q |
67 |
ttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaatctgctgcaaaagaaaagtttcttggttcacattctttttatcatctt |
166 |
Q |
| |
|
|||||| ||||||| ||| | || ||||||| || ||||| ||||||||||||| |||||||||||| |||||||||||||||| ||| | |||||| |
|
|
| T |
9598531 |
ttctcatgattgtcgtgtctttgcattctcagttgctcccttgctttagtaatcttttgcaaaagaaaactttcttggttcacattttttcttccatctt |
9598630 |
T |
|
| Q |
167 |
tcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctg |
232 |
Q |
| |
|
||||| |||| |||||||||||||||||| ||||||| || | | |||||||||||||| ||||| |
|
|
| T |
9598631 |
tcatatatgagctctgatacctctcaatcatctgtttggcttcctttagatttggccacacctctg |
9598696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 232
Target Start/End: Original strand, 3317131 - 3317301
Alignment:
| Q |
62 |
gctccttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaatctgctgcaaaagaaaagtttcttggttcacattctttttatc |
161 |
Q |
| |
|
|||| |||||| ||||||| ||| | || ||||||| |||||| |||||||||||||| |||||||| ||| |||||||||||||||| ||| | || |
|
|
| T |
3317131 |
gctcattctcatgattgtcgtgtctttgcattctcagctgttccttagctttagtaatcctttgcaaaaggaaactttcttggttcacattttttctctc |
3317230 |
T |
|
| Q |
162 |
atctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctg |
232 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||||||||| || | | ||||||||||||| ||||| |
|
|
| T |
3317231 |
atctttcatatatgagttctgatacctttcaatcacctgttttgcttccttcagatttggccacacctctg |
3317301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 20849055 - 20849172
Alignment:
| Q |
109 |
gctttagtaatctgctgcaaaagaaaagtttcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactc |
208 |
Q |
| |
|
|||||||||||| |||||| || ||| | |||||||||||||||||| | |||||||||| ||||| ||||| |||||||||||||||||| || | | |
|
|
| T |
20849055 |
gctttagtaatcctctgcaataggaaactctcttggttcacattctttgtttcatctttcactgatgagttctggtacctctcaatcacctgtctggccc |
20849154 |
T |
|
| Q |
209 |
catctagatttggccaca |
226 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
20849155 |
tctctagatctggccaca |
20849172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 20856145 - 20856238
Alignment:
| Q |
139 |
tcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctg |
232 |
Q |
| |
|
|||||||||| ||||||| | |||||||||| ||||| ||||| ||||| |||||||||||| || | || ||||||| |||||||| ||||| |
|
|
| T |
20856145 |
tcttggttcatattctttgtttcatctttcactgatgagttctggtacctttcaatcacctgtctggccccctctagatctggccacacctctg |
20856238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University