View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12223_low_2 (Length: 442)

Name: NF12223_low_2
Description: NF12223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12223_low_2
NF12223_low_2
[»] chr3 (12 HSPs)
chr3 (20-430)||(19850014-19850424)
chr3 (27-234)||(20035276-20035483)
chr3 (27-204)||(19839661-19839838)
chr3 (20-205)||(19957312-19957497)
chr3 (35-174)||(19819774-19819913)
chr3 (20-170)||(19833072-19833222)
chr3 (185-391)||(26648136-26648342)
chr3 (21-139)||(20005994-20006111)
chr3 (239-363)||(19813395-19813519)
chr3 (63-130)||(19813562-19813629)
chr3 (286-352)||(19952274-19952340)
chr3 (185-259)||(20015092-20015166)
[»] chr5 (3 HSPs)
chr5 (27-291)||(27472903-27473170)
chr5 (305-428)||(27472787-27472910)
chr5 (185-259)||(9816187-9816261)
[»] chr8 (1 HSPs)
chr8 (217-427)||(22685232-22685443)
[»] chr1 (1 HSPs)
chr1 (248-342)||(1718242-1718336)


Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 20 - 430
Target Start/End: Complemental strand, 19850424 - 19850014
Alignment:
Q  20 caacaccttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  19850424 caacaccttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttgacgatccacatt 19850325  T
Q  120 tgatgatataaaatcaccaagttcagaattaggcaaagagactttgtttctgataccattgcttctgctttcaccttgagtctcagataagcacactcgg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19850324 tgatgatataaaatcaccaagttcagaattaggcaaagagactttgtttctgataccattgcttctgctttcaccttgagtctcagataagcacactcgg 19850225  T
Q  220 tcactacaaatcctttcttttttgctctcatttgcatctttaaacccatcttccaaaacccctattgaaacttcaatgttatcttttgaaactggccctt 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19850224 tcactacaaatcctttcttttttgctctcatttgcatctttaaacccatcttccaaaacccctattgaaacttcaatgttttcttttgaaactggccctt 19850125  T
Q  320 tcactggtattatcttttcataatctgccgaaggggttgaacaacatttgttcaataaatgattagattcattgactttacgaccacgtttacactcttt 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19850124 tcactggtattatcttttcataatctgccgaaggggttgaacaacattcgttcaataaatgattagattcattgactttacgaccacgtttacactcttt 19850025  T
Q  420 caacacaggtt 430  Q
    |||||||||||    
T  19850024 caacacaggtt 19850014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 20035276 - 20035483
Alignment:
Q  27 ttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatttgatgat 126  Q
    ||||||| ||||||||| ||||||||||| |||| |||||||| |||| |||||||||||||| ||||||||||||||||||| |||||||| |||||||    
T  20035276 ttccccattgatgtcattgacatcatttctatcataaaatggactctttatttcatcttcatcaccacatccagctatttcaccatccacatatgatgat 20035375  T
Q  127 ataaaatcaccaagttcagaattaggcaaagagactttgtttctgataccattgcttctgctttcaccttgagtctcagataagcacactcggtcactac 226  Q
    ||||||||||||| ||||||||||| |||||||||||  ||||| | | ||| ||| |   |||||||||||||||||||||| || |||  |||||||     
T  20035376 ataaaatcaccaaattcagaattagacaaagagacttcatttctcacagcatagctacaaatttcaccttgagtctcagataaacaaactttgtcactag 20035475  T
Q  227 aaatcctt 234  Q
    ||||||||    
T  20035476 aaatcctt 20035483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 27 - 204
Target Start/End: Complemental strand, 19839838 - 19839661
Alignment:
Q  27 ttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatttgatgat 126  Q
    ||||||| ||||||||| ||||||||||| |||| ||||| || ||||||||||||||||||| |  |||||||| ||||||| ||||||||||||||||    
T  19839838 ttccccattgatgtcattgacatcatttctatcataaaatagactcttgatttcatcttcatcacagcatccagccatttcaccatccacatttgatgat 19839739  T
Q  127 ataaaatcaccaagttcagaattaggcaaagagactttgtttctgataccattgcttctgctttcaccttgagtctca 204  Q
    ||||||||||||| ||||||||||| ||| ||||||| |||||||||| ||| ||| |  || |||||||||||||||    
T  19839738 ataaaatcaccaaattcagaattagacaatgagacttcgtttctgatagcatagctacaactatcaccttgagtctca 19839661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 19957497 - 19957312
Alignment:
Q  20 caacaccttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatt 119  Q
    |||||| ||||||| ||||||| | ||||||||||| |||| |||||||| ||||||||||||||||||| | | ||||||||||||||| ||||| |||    
T  19957497 caacactttccccattgatgtcgttgacatcatttctatcataaaatggactcttgatttcatcttcatcacaaaatccagctatttcaccatccatatt 19957398  T
Q  120 tgatgatataaaatcaccaagttcagaattaggcaaagagactttgtttctgataccattgcttctgctttcaccttgagtctcag 205  Q
    ||||||||| || ||||||| ||||||| ||| |||||||||||  ||||||||| ||| ||| | ||||||||||||||||||||    
T  19957397 tgatgatatgaattcaccaaattcagaactagacaaagagacttcatttctgatagcatcgctacagctttcaccttgagtctcag 19957312  T

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Target: chr3; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 35 - 174
Target Start/End: Complemental strand, 19819913 - 19819774
Alignment:
Q  35 tgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatttgatgatataaaatc 134  Q
    ||||||||| ||||||||||| |||| ||||| || ||||||||||||||||||| ||||||||| ||||||||| |||||| |||||||||||||||||    
T  19819913 tgatgtcattgacatcatttctatcataaaatagactcttgatttcatcttcatcaccacatccaactatttcaccatccacttttgatgatataaaatc 19819814  T
Q  135 accaagttcagaattaggcaaagagactttgtttctgata 174  Q
    ||||| ||||||| ||| |||||||||||  |||||||||    
T  19819813 accaaattcagaactagacaaagagacttgatttctgata 19819774  T

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Target: chr3; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 20 - 170
Target Start/End: Complemental strand, 19833222 - 19833072
Alignment:
Q  20 caacaccttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatt 119  Q
    |||||| ||||||| |||||| || ||||||| ||| || | ||| |||| ||||| |||||||||||||||||||| | |||||||||| |||||||||    
T  19833222 caacactttccccattgatgtaattgacatcaattctattataaagtggactcttgctttcatcttcatccccacattcggctatttcaccatccacatt 19833123  T
Q  120 tgatgatataaaatcaccaagttcagaattaggcaaagagactttgtttct 170  Q
    |||||||||||||||||||| ||||||||||| |||||| |||| ||||||    
T  19833122 tgatgatataaaatcaccaaattcagaattagacaaagatacttcgtttct 19833072  T

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Target: chr3; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 185 - 391
Target Start/End: Complemental strand, 26648342 - 26648136
Alignment:
Q  185 tgctttcaccttgagtctcagataagcacactcggtcactacaaatcctttcttttttgctctcatttgcatctttaaacccatcttccaaaacccctat 284  Q
    ||||||||||||||||||||||||| || |||| |||| || | |||||| ||| ||||||| |||||||||||| | |  |||| ||||||    ||||    
T  26648342 tgctttcaccttgagtctcagataaacagactctgtcattagacatccttgcttgtttgctcccatttgcatcttcagaatcatcctccaaactttctat 26648243  T
Q  285 tgaaacttcaatgttatcttttgaaactggccctttcactggtattatcttttcataatctgccgaaggggttgaacaacatttgttcaataaatgatta 384  Q
    ||||| |||||||||||||  ||||||||||| ||||| ||||| |||||||||||||| ||| |||| || |||||||| || || ||||||||| |||    
T  26648242 tgaaagttcaatgttatctactgaaactggccttttcagtggtaatatcttttcataatatgctgaagaggctgaacaactttggtccaataaatgctta 26648143  T
Q  385 gattcat 391  Q
    |||||||    
T  26648142 gattcat 26648136  T

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Target: chr3; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 20005994 - 20006111
Alignment:
Q  21 aacaccttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacattt 120  Q
    ||||||||||||| | ||| ||| ||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| ||||| | | ||||||    
T  20005994 aacaccttccccattaatggcatcgacatcatttctatcacaaaatggatttttgatttcatcttcattcccacatccagcta-ttcaccaccaacattt 20006092  T
Q  121 gatgatataaaatcaccaa 139  Q
    |||||||||||||||||||    
T  20006093 gatgatataaaatcaccaa 20006111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 239 - 363
Target Start/End: Complemental strand, 19813519 - 19813395
Alignment:
Q  239 ttttgctctcatttgcatctttaaacccatcttccaaaacccctattgaaacttcaatgttatcttttgaaactggccctttcactggtattatcttttc 338  Q
    |||||||  ||||||||||||||||| |||| || ||| |||||||||||| |||||||||||||||||||| ||||| ||||| |||||  || |||||    
T  19813519 ttttgcttgcatttgcatctttaaactcatcctcgaaatcccctattgaaaattcaatgttatcttttgaaagtggccttttcagtggtaacatattttc 19813420  T
Q  339 ataatctgccgaaggggttgaacaa 363  Q
    ||||||||| |||| || |||||||    
T  19813419 ataatctgctgaagaggctgaacaa 19813395  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 130
Target Start/End: Complemental strand, 19813629 - 19813562
Alignment:
Q  63 aaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatttgatgatataa 130  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||   |||||| |||||||||||    
T  19813629 aaatggactcttgatttcatcttcatccccacatccagctatttcacttgccacatctgatgatataa 19813562  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 286 - 352
Target Start/End: Complemental strand, 19952340 - 19952274
Alignment:
Q  286 gaaacttcaatgttatcttttgaaactggccctttcactggtattatcttttcataatctgccgaag 352  Q
    |||| ||||||| ||||||| |||||||||| ||||| ||||| |||||||||||||||||| ||||    
T  19952340 gaaagttcaatgctatctttcgaaactggccttttcagtggtaatatcttttcataatctgctgaag 19952274  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 20015092 - 20015166
Alignment:
Q  185 tgctttcaccttgagtctcagataagcacactcggtcactacaaatcctttcttttttgctctcatttgcatctt 259  Q
    |||||||| |||||||||||||||| || |||| |||||||   |||||| |||  |||||| ||||||||||||    
T  20015092 tgctttcagcttgagtctcagataaacagactctgtcactagtcatccttacttccttgctcccatttgcatctt 20015166  T

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Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 27 - 291
Target Start/End: Complemental strand, 27473170 - 27472903
Alignment:
Q  27 ttccccactgatgtcatggacatcatttccatcacaaaatggattcttgatttcatcttcatccccacatccagctatttcacgatccacatttgatgat 126  Q
    ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||| |||  |||||||||| ||||||||||||||||    
T  27473170 ttccccactgatgtcattgacatcattttcatcacaaaatgaattcttgatttcatcttcatccccatatcttgctatttcaccatccacatttgatgat 27473071  T
Q  127 ataaaatcaccaagttcagaattaggcaaagagactttgtttctgataccat---tgcttctgctttcaccttgagtctcagataagcacactcggtcac 223  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||   | ||||||||||||||||||||||||||||||||| |||||||||    
T  27473070 ataaaatcaccaagttcagaattagaaaaagagactttgtttctgataccatagcttcttctgctttcaccttgagtctcagataagcaccctcggtcac 27472971  T
Q  224 tacaaatcctttcttttttgctctcatttgcatctttaaacccatcttccaaaacccctattgaaact 291  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||    
T  27472970 tacacatcctttcttttttgctctcatttgcatctttaaacccatcctttaaaacccctattgaaact 27472903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 305 - 428
Target Start/End: Complemental strand, 27472910 - 27472787
Alignment:
Q  305 ttgaaactggccctttcactggtattatcttttcataatctgccgaaggggttgaacaacatttgttcaataaatgattagattcattgactttacgacc 404  Q
    |||||||||||| ||||||||||| | |||||||| ||||| | |||  || ||||||| ||| | |||||||||||||||||||||||||||| | | |    
T  27472910 ttgaaactggccttttcactggtactctcttttcaaaatcttctgaataggctgaacaaaattcgctcaataaatgattagattcattgactttgccatc 27472811  T
Q  405 acgtttacactctttcaacacagg 428  Q
    ||  || |||||||| ||||||||    
T  27472810 acacttgcactcttttaacacagg 27472787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 9816261 - 9816187
Alignment:
Q  185 tgctttcaccttgagtctcagataagcacactcggtcactacaaatcctttcttttttgctctcatttgcatctt 259  Q
    ||||||||||||||||||||||||| || |||| ||||| | |||||||| ||| ||||||   |||||||||||    
T  9816261 tgctttcaccttgagtctcagataaacagactctgtcaccataaatccttgcttctttgcttcgatttgcatctt 9816187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 217 - 427
Target Start/End: Original strand, 22685232 - 22685443
Alignment:
Q  217 cggtcactacaaatcctttcttttttgctctcatttgcatctttaaacccatcttccaaaacccctattgaaacttcaatgttatcttttgaaactggcc 316  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  22685232 cggtcactacacatcctttcttttttgctctcatttgcatctttaaacccatcttccaaaacccctattgaaacttcaatgttatcctttgaaactggcc 22685331  T
Q  317 ctttcactggtattatcttttcataatctgccgaaggggttgaacaacat-ttgttcaataaatgattagattcattgactttacgaccacgtttacact 415  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||    |||||||||||||||||||| |||||||| |  ||||  || ||||    
T  22685332 ctttcactggtattatcttttcataatctgctgaaggggttgaacaacataaccttcaataaatgattagattcgttgactttgccgccacacttgcact 22685431  T
Q  416 ctttcaacacag 427  Q
    ||||||||||||    
T  22685432 ctttcaacacag 22685443  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 342
Target Start/End: Complemental strand, 1718336 - 1718242
Alignment:
Q  248 catttgcatctttaaacccatcttccaaaacccctattgaaacttcaatgttatcttttgaaactggccctttcactggtattatcttttcataa 342  Q
    |||||||||||| |||  | || ||||||  || |||||||| ||| |||||||||||||||| || ||  |||| ||||| |||||||||||||    
T  1718336 catttgcatcttcaaaatcttcctccaaacaccttattgaaagttcgatgttatcttttgaaattgacctcttcagtggtaatatcttttcataa 1718242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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