View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12223_low_3 (Length: 401)
Name: NF12223_low_3
Description: NF12223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12223_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 31941670 - 31941456
Alignment:
| Q |
19 |
gcaagtttgttatccatttgaaggataagtttcgaaggaagatattaactcctaggtttaccccaccaatgatttttcaaattgagaaacaagct-gtcc |
117 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||| ||||| |||||||||||| | ||| |
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| T |
31941670 |
gcaagtttgttatccatttgaaggatatgtttcgaaggaagatatcaactcctaagtttaccccaccaatgatgtttcagcttgagaaacaagttcttcc |
31941571 |
T |
|
| Q |
118 |
tttccataactttgatgtcttgccatcccctcttgtccatgatcagattaattttgagaattcttatg-aaaaaatgttgacttctgaagactatgatgg |
216 |
Q |
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||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||| |
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| T |
31941570 |
ttttcataactttgatgacttgccatccccttttgtccatgatcagattaattttgataattcttatgaaaaaaatgttgacttcagaagcctatgatgg |
31941471 |
T |
|
| Q |
217 |
tggatatatggtgag |
231 |
Q |
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||||||| ||||||| |
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| T |
31941470 |
tggatatgtggtgag |
31941456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 353 - 385
Target Start/End: Complemental strand, 31941127 - 31941095
Alignment:
| Q |
353 |
cgggcattgtattgcaacatattagcttctcca |
385 |
Q |
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|||||||| |||||||||||||||||||||||| |
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| T |
31941127 |
cgggcattatattgcaacatattagcttctcca |
31941095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 23 - 231
Target Start/End: Original strand, 10852414 - 10852624
Alignment:
| Q |
23 |
gtttgttatccatttgaaggataagtttcgaaggaagatattaactcctaggtttaccccaccaatgatttttcaaattgagaaacaagctg-tcctttc |
121 |
Q |
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||||||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| || | ||||| |
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| T |
10852414 |
gtttgttatccatatgaaggataggtttcaaaggaagatatcaactcctaggtttaccccaccaatgatttttcagcttgagaaacaagttgtttctttc |
10852513 |
T |
|
| Q |
122 |
cataactttgatgtcttgccatcccctcttgtccatgatcagattaattttgagaattcttatg-aaaaaatgttgacttctgaagactatgatggtgga |
220 |
Q |
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|||||||||||||||||||||||| || ||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10852514 |
cataactttgatgtcttgccatcctcttttgtccatgatcacgttaattttaagaattcttatgtaaaaaatgttgacttctgaagactatgatggtgga |
10852613 |
T |
|
| Q |
221 |
tatatggtgag |
231 |
Q |
| |
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||| ||||||| |
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| T |
10852614 |
tatgtggtgag |
10852624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 19462671 - 19462871
Alignment:
| Q |
19 |
gcaagtttgttatccatttgaaggataagtttcgaaggaagatattaactcctaggtttaccccaccaatgatttttcaaattgagaaacaagctgt-cc |
117 |
Q |
| |
|
|||||||| |||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| ||| || |
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| T |
19462671 |
gcaagttttttatccatttgatgaataggtttcgaaggaagataccaactcctaggtttaccccaccaatgatttttcagcttgagaatcaagttgttcc |
19462770 |
T |
|
| Q |
118 |
tttccataactttgatgtcttgccatcccctcttgtccatgatcagattaattttgagaattcttatgaaaaaatgttgacttctgaagactatgatggt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
19462771 |
tttccataactttgatgtcttgccatccccttttgtccattatcaggttaattttgagaattcttatgaaaaaatgtttacttctgaagactatgatggt |
19462870 |
T |
|
| Q |
218 |
g |
218 |
Q |
| |
|
| |
|
|
| T |
19462871 |
g |
19462871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 215
Target Start/End: Original strand, 10196947 - 10197047
Alignment:
| Q |
115 |
tcctttccataactttgatgtcttgccatcccctcttgtccatgatcagattaattttgagaattcttatgaaaaaatgttgacttctgaagactatgat |
214 |
Q |
| |
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|||||||||||| |||||||||||| | |||||| |||| |||||| | |||||||||| ||||||||| || || ||||| | ||| || |||||| |
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| T |
10196947 |
tcctttccataaatttgatgtcttgtcgtccccttttgtgcatgatgactttaattttgaattttcttatgagaagatattgacctttgatgaatatgat |
10197046 |
T |
|
| Q |
215 |
g |
215 |
Q |
| |
|
| |
|
|
| T |
10197047 |
g |
10197047 |
T |
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