View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12223_low_4 (Length: 382)
Name: NF12223_low_4
Description: NF12223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12223_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 52699225 - 52699589
Alignment:
| Q |
1 |
gtatgagactagagagagcaggcattttctacttgacattacattttggtaaccgttgacgactcaaattataaaccaccagagaaggtcaaagttacaa |
100 |
Q |
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| T |
52699225 |
gtatgagactagagagagcgggcattttctacttgacattacattttggtaaccgttgacgactcaaattataaaccaccagagaaggtcaaagttacaa |
52699324 |
T |
|
| Q |
101 |
aggtttgtagagtaaggaactaaaattgaataaaacagtatctagggaacgaagtcaaaccttaatataaccagaagtgtaatttagtcttagttttatt |
200 |
Q |
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| T |
52699325 |
agttttgtagagtaaggaactaaaattgaataaaacagtatctagggaacgaagtcaaaccttaatataaccagaagtgtaatttagtcttagttttatt |
52699424 |
T |
|
| Q |
201 |
tgggtctataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagtaacagatggagtgtatgca |
300 |
Q |
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| T |
52699425 |
tgggtctataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgca |
52699524 |
T |
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| Q |
301 |
cagtgacacaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccatt |
365 |
Q |
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| T |
52699525 |
cagtgacacaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccatt |
52699589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 208 - 365
Target Start/End: Original strand, 52722728 - 52722885
Alignment:
| Q |
208 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagtaacagatggagtgtatgcacagtgac |
307 |
Q |
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| T |
52722728 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagcaacagatggagtgtatgcacagtgac |
52722827 |
T |
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| Q |
308 |
acaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccatt |
365 |
Q |
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| T |
52722828 |
acaagtcgaagaattcaaatcattcgttaaaatccttccagtatcggcctctaccatt |
52722885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 208 - 365
Target Start/End: Original strand, 52713706 - 52713863
Alignment:
| Q |
208 |
ataagattggagcaaattaattttgcaggttttttgacaaagcagcagttataacagaaaaagacacagttagtaacagatggagtgtatgcacagtgac |
307 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||| | || |||||||||||||||||||||||||| |
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| T |
52713706 |
ataagatcggagcaaattaattttgcagattttttgacaaagcagcagttattacagaaaaggacacactcagcaacagatggagtgtatgcacagtgac |
52713805 |
T |
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| Q |
308 |
acaagtcgaagaattcaaatcattcattaaaatccttccagtgtgggcatctaccatt |
365 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52713806 |
acaagtggaagagttcaaatcattcattaaaatccttccagtgtgggcatctaccatt |
52713863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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