View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12223_low_6 (Length: 345)

Name: NF12223_low_6
Description: NF12223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12223_low_6
NF12223_low_6
[»] chr3 (3 HSPs)
chr3 (146-345)||(46832996-46833195)
chr3 (6-169)||(46833202-46833365)
chr3 (302-340)||(10355740-10355778)
[»] chr2 (5 HSPs)
chr2 (127-258)||(923682-923811)
chr2 (80-164)||(923592-923679)
chr2 (280-324)||(22964768-22964812)
chr2 (280-324)||(22996754-22996798)
chr2 (281-324)||(924083-924126)
[»] chr8 (2 HSPs)
chr8 (127-265)||(27540802-27540937)
chr8 (72-149)||(27540956-27541035)
[»] chr7 (2 HSPs)
chr7 (92-221)||(45032091-45032223)
chr7 (302-340)||(22008734-22008772)
[»] chr5 (1 HSPs)
chr5 (116-219)||(4357194-4357297)


Alignment Details
Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 146 - 345
Target Start/End: Complemental strand, 46833195 - 46832996
Alignment:
Q  146 aaaatggtgtctttttagagtttaaaaatgaatgcagttgatctaagtttcaaacacatggacatgttttctaataattataacctttataattgatttt 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  46833195 aaaatggtgtctttttagagtttaaaaatgaatgcagttgatctaagtttcaaatacatggacatattttctaataattataacctttataattgatttt 46833096  T
Q  246 tccgtgttgagattttatttggataagttatttggattctttgcctataatttttattcttatactccatgagaaatggctaggctattctttctctgct 345  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||    
T  46833095 tccgtgttgagattttatttggataaattatttggattttttgcctataatttttattcttatactccatgagaaatggcatggctattctttctttgct 46832996  T

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Target: chr3; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 46833365 - 46833202
Alignment:
Q  6 aagtgctgcatgtttttctgtaaaagtttataaatgaagcctatacgtggtcataaaactaatgtatcaataactatgtttcaatcactattttaaagtg 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46833365 aagtgctgcatgtttttctgtaaaagtttataaatgaagcctatatgtggtcataaaactaatgtatcaataactatgtttcaatcattattttaaagtg 46833266  T
Q  106 tctctaatagtgtgtttttcctctttaagagtttcgattgaaaatggtgtctttttagagttta 169  Q
    ||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  46833265 tctctaatcatgtgtttttcttctttaagagtttcgattgaaaatggtgtctttttagagttta 46833202  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 10355778 - 10355740
Alignment:
Q  302 ttcttatactccatgagaaatggctaggctattctttct 340  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10355778 ttcttatactccatgagaaatggctaggctattctttct 10355740  T

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Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 127 - 258
Target Start/End: Original strand, 923682 - 923811
Alignment:
Q  127 tctttaagagtttcgattgaaaa-tggtgtctttttagagtttaaaaatgaatgcagttgatctaagtttcaaacacatggacatgttttctaataatta 225  Q
    ||||||||||||| ||| ||||| | |||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||| ||||||||   |    
T  923682 tctttaagagtttagatagaaaaatagtgtctttttagagtttagaaatgaatgcagcagatctaagtttcaaacacatggacatgtgttctaata---a 923778  T
Q  226 taacctttataattgatttttccgtgttgagat 258  Q
    |||| ||||||||||||||||| | ||||||||    
T  923779 taacttttataattgatttttctgcgttgagat 923811  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 923592 - 923679
Alignment:
Q  80 tatgtttcaatcactattttaaa--gtgtctctaatagtgtgtttttcctctttaagagtttcgattg-aaaatggtgtctttttaga 164  Q
    |||||||||||||||||||||||  |||||||||||  | |||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  923592 tatgtttcaatcactattttaaagtgtgtctctaatcatatgtttttcttctttaagagtttggattgaaaaatggtgtctttttaga 923679  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 22964812 - 22964768
Alignment:
Q  280 gattctttgcctataatttttattcttatactccatgagaaatgg 324  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  22964812 gattctttgcctataatttttattcttatactccatgaaaaatgg 22964768  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 22996754 - 22996798
Alignment:
Q  280 gattctttgcctataatttttattcttatactccatgagaaatgg 324  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||    
T  22996754 gattatttgcctataatttttattcttatactccgtgagaaatgg 22996798  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 924083 - 924126
Alignment:
Q  281 attctttgcctataatttttattcttatactccatgagaaatgg 324  Q
    ||||||||||||| |||||||||||||| |||||||||||||||    
T  924083 attctttgcctatgatttttattcttattctccatgagaaatgg 924126  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 127 - 265
Target Start/End: Complemental strand, 27540937 - 27540802
Alignment:
Q  127 tctttaagagtttcgattgaaaa-tggtgtctttttagagtttaaaaatgaatgcagttgatctaagtttcaaacacatggacatgttttctaataatta 225  Q
    ||||||||||||| ||| ||||| ||||||||||| | || ||| |||||||||||| | ||||||||||||||||||||||||||| ||||||||   |    
T  27540937 tctttaagagtttagatagaaaaatggtgtctttt-atagcttataaatgaatgcagataatctaagtttcaaacacatggacatgtgttctaata---a 27540842  T
Q  226 taacctttataattgatttttccgtgttgagattttattt 265  Q
    ||||||| |||||||||||||| |  ||||||||||||||    
T  27540841 taaccttcataattgatttttctgcattgagattttattt 27540802  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 72 - 149
Target Start/End: Complemental strand, 27541035 - 27540956
Alignment:
Q  72 tcaataactatgtttcaatcactattttaaag--tgtctctaatagtgtgtttttcctctttaagagtttcgattgaaaa 149  Q
    ||||| |||||||||||||||||| |||||||  ||||| ||||  |||||||||| ||||||||| ||| |||||||||    
T  27541035 tcaattactatgtttcaatcactaatttaaagtatgtctttaatcatgtgtttttcttctttaagaattttgattgaaaa 27540956  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 221
Target Start/End: Original strand, 45032091 - 45032223
Alignment:
Q  92 actattttaaagtgt--ctctaatagtgtgtttttcctctttaagagtttcgattg-aaaatggtgtctttttagagtttaaaaatgaatgcagttgatc 188  Q
    |||||||||||||||  |||||||  ||||| |||| ||||||||||| | ||| | ||||| ||||||||| |||||||| ||||| |||||  | |||    
T  45032091 actattttaaagtgtgcctctaatcatgtgtctttcttctttaagagtgtagatagtaaaattgtgtcttttaagagtttataaatgtatgcaacttatc 45032190  T
Q  189 taagtttcaaacacatggacatgttttctaata 221  Q
    |||||||||||||||||||||||| | ||||||    
T  45032191 taagtttcaaacacatggacatgtgtgctaata 45032223  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 302 - 340
Target Start/End: Original strand, 22008734 - 22008772
Alignment:
Q  302 ttcttatactccatgagaaatggctaggctattctttct 340  Q
    |||||||||||||||||||||||||||||||||||||||    
T  22008734 ttcttatactccatgagaaatggctaggctattctttct 22008772  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 219
Target Start/End: Original strand, 4357194 - 4357297
Alignment:
Q  116 tgtgtttttcctctttaagagtttcgat-tgaaaatggtgtctttttagagtttaaaaatgaatgcagttgatctaagtttcaaacacatggacatgttt 214  Q
    ||||| |||| ||||||||||||| ||| | ||||  ||||||||  |||||||  |||||||||||| |||||||||||| |||||||||||||||| |    
T  4357194 tgtgtctttcttctttaagagtttagatataaaaaatgtgtcttta-agagtttggaaatgaatgcagctgatctaagtttaaaacacatggacatgtgt 4357292  T
Q  215 tctaa 219  Q
    |||||    
T  4357293 tctaa 4357297  T

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