View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12223_low_7 (Length: 332)

Name: NF12223_low_7
Description: NF12223
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12223_low_7
NF12223_low_7
[»] chr5 (1 HSPs)
chr5 (19-319)||(37934969-37935265)
[»] chr4 (9 HSPs)
chr4 (211-316)||(845313-845418)
chr4 (32-107)||(10481344-10481419)
chr4 (209-282)||(10455845-10455917)
chr4 (37-110)||(10467221-10467294)
chr4 (32-109)||(6387392-6387469)
chr4 (31-93)||(10459796-10459858)
chr4 (35-84)||(10463461-10463510)
chr4 (32-80)||(10474407-10474455)
chr4 (29-93)||(10554468-10554532)
[»] chr2 (1 HSPs)
chr2 (21-93)||(25376341-25376413)
[»] chr8 (1 HSPs)
chr8 (37-126)||(42847376-42847465)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 37935265 - 37934969
Alignment:
Q  19 gtagtgagggttggagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggagaagagagagtatttccgcaatcaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  37935265 gtagtgagggttggagatgagagttttgaaaaatttgttgacgcatttgtatcgcatgagaggtttgacggggagaagagagagtatttccgcaatcaat 37935166  T
Q  119 tcgttggggaggaacaatgccgccctcgccaccatagcttgccgttcaagttaaaccctagctacccacccagccaccgttccaaagttaattgagaaag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||| ||||||||||||    
T  37935165 tcgttggggaggaacaatgccgccctcgccaccatagcttgccgttcaagttaaaccctagcta----cccagccaccgttccaaagctaattgagaaag 37935070  T
Q  219 gaaaaggataatttacgtcacatggttcttcatttgcacctttaggtacatcaagattgttctcaactacctgaacctgaaacatcgcaacacaatcaca 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37935069 gaaaaggataatttacgtcacatggttcttcatttgcacctttaggtacatcaagattgttctcaactacctgaacctgaaacatcgcaacataatcaca 37934970  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 845418 - 845313
Alignment:
Q  211 tgagaaaggaaaaggataatttacgtcacatggttcttcatttgcacctttaggtacatcaagattgttctcaactacctgaacctgaaacatcgcaaca 310  Q
    |||||||||| || |||||||||||||||| |||||||||   ||| ||||||||| ||||||||||||||||||  |||||||||||| ||| ||||||    
T  845418 tgagaaaggacaaagataatttacgtcacagggttcttcaggagcatctttaggtatatcaagattgttctcaacatcctgaacctgaagcattgcaaca 845319  T
Q  311 caatca 316  Q
    ||||||    
T  845318 caatca 845313  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 32 - 107
Target Start/End: Complemental strand, 10481419 - 10481344
Alignment:
Q  32 gagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggagaagagagagtattt 107  Q
    ||||||||||| ||| |||| |||||||||||  |||||||||| |||||||||||||||||||||||||||||||    
T  10481419 gagatgagagtgttgtaaaacttgttgacgcacctgaatcgcataagaggtttcacggggagaagagagagtattt 10481344  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 10455917 - 10455845
Alignment:
Q  209 attgagaaaggaaaaggataatttacgtcacatggttcttcatttgcacctttaggtacatcaagattgttctc 282  Q
    ||||||||||||||| | |||||||| ||||| ||||||||||||| | |||||| |||||||||| |||||||    
T  10455917 attgagaaaggaaaaag-taatttacatcacacggttcttcatttgtatctttagttacatcaagactgttctc 10455845  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 10467294 - 10467221
Alignment:
Q  37 gagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggagaagagagagtatttccg 110  Q
    |||||| ||| |||| |||||||||||  ||||| ||||||||||||||||||| | |||||| ||||||||||    
T  10467294 gagagtgttgtaaaacttgttgacgcacctgaattgcatgagaggtttcacgggcaaaagagatagtatttccg 10467221  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 6387469 - 6387392
Alignment:
Q  32 gagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggagaagagagagtatttcc 109  Q
    ||||||| ||| |||||||| |||||||||||| |||||  ||| |||||||| |||||||||  |||||| ||||||    
T  6387469 gagatgacagtgttgaaaaacttgttgacgcatctgaatttcataagaggtttaacggggagacaagagaggatttcc 6387392  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 93
Target Start/End: Complemental strand, 10459858 - 10459796
Alignment:
Q  31 ggagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggag 93  Q
    ||||| |||||| |||||||||||||| |||||  ||||| |||| ||| |||||||||||||    
T  10459858 ggagaggagagtgttgaaaaatttgttaacgcacctgaattgcataagatgtttcacggggag 10459796  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 10463510 - 10463461
Alignment:
Q  35 atgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggttt 84  Q
    |||||||| || |||||||||||||||||  |||||||||| ||||||||    
T  10463510 atgagagtgttaaaaaatttgttgacgcacctgaatcgcataagaggttt 10463461  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 10474455 - 10474407
Alignment:
Q  32 gagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagag 80  Q
    ||||||||||| || |||||||||||||||||| |||| ||||| ||||    
T  10474455 gagatgagagtgttaaaaaatttgttgacgcatctgaaccgcataagag 10474407  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 10554468 - 10554532
Alignment:
Q  29 ttggagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggag 93  Q
    ||||||||| | ||||||||||| ||||| || || |||||| |||| ||||||||||| |||||    
T  10554468 ttggagatgcgggttttgaaaaacttgttaacacacttgaattgcataagaggtttcacagggag 10554532  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 25376413 - 25376341
Alignment:
Q  21 agtgagggttggagatgagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggag 93  Q
    ||||||| | ||||||||||||||||||||| ||||| |||||| |||||||||| ||||||||||| |||||    
T  25376413 agtgaggatcggagatgagagttttgaaaaacttgttaacgcatctgaatcgcataagaggtttcaccgggag 25376341  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 126
Target Start/End: Original strand, 42847376 - 42847465
Alignment:
Q  37 gagagttttgaaaaatttgttgacgcatttgaatcgcatgagaggtttcacggggagaagagagagtatttccgcaatcaattcgttggg 126  Q
    |||||| |||||||| ||||| || ||| | |||||||| ||||||||||||| ||| |  |||| ||||||  |||||| |||||||||    
T  42847376 gagagtgttgaaaaacttgttaacacatctaaatcgcataagaggtttcacggagagcaaggagaatatttctacaatcagttcgttggg 42847465  T

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