View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12224_high_2 (Length: 545)
Name: NF12224_high_2
Description: NF12224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12224_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 381
Target Start/End: Original strand, 45892432 - 45892809
Alignment:
| Q |
11 |
cagagaagatataattgtaaggaaatcctacttgcaccacgagctgcaagtcgataaaataacagacataaaagaacatgagcatccattgttttcaatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45892432 |
cagagaagatataattgtaaggaaatcctacttgcaccacgagctgcaagtcgataaaataacagacataaaagaacatgagcatccattgttttcaatg |
45892531 |
T |
|
| Q |
111 |
tactcaataaaccatgtcctgaaagaatgagaagtgttggttcatgcctgagtcacatagccgacaataaatatggagaagccgactgttgttgccgacg |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45892532 |
tactcaataaaccttgtcctgaaagaatgagaagtgttggttcatgcctgagtcacatagccgacaataaatatggagaagccgactgttgttgccgacg |
45892631 |
T |
|
| Q |
211 |
atgattttccaataaaagccgataacatgaaggccaacccagtctaaaacaaaaggagaaaatactaggaatcagaaaaaatcttcagattc-------a |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45892632 |
atgattttccaataaaagccgataacatgaaggccaacccagtctaaaacaaaaggagaaaatactaggaatcagaaaaaatcttcagattcacagaata |
45892731 |
T |
|
| Q |
304 |
cagaatagacccaaatgnnnnnnncagaaagtataaattgtaaagctagaagattctcaccatgttaaattcaaatag |
381 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45892732 |
cagaatagacccaaatgaaaaaaacagaaagtataaattgtaaagctagaagattctcaccatgttaaattcaaatag |
45892809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 63 - 381
Target Start/End: Complemental strand, 12981523 - 12981200
Alignment:
| Q |
63 |
gataaaataacagacataaaagaacatgagcatccattgttttcaatgtactcaataaaccatgtcctgaaagaatgagaagtgttg-gttcatgcctga |
161 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||| ||| | ||||||||||||||| |||| ||||| |||||||||| || |||||||||||| |
|
|
| T |
12981523 |
gataaaataacagatataaaagaacataagcatccattgatttga-tgtactcaataaaccttgtcatgaaacaatgagaagtattttgttcatgcctga |
12981425 |
T |
|
| Q |
162 |
gtcacatagccgacaataaatatggagaagccgactgttgttgccgacgatgattttccaataaaagccgataacatgaaggccaacccagtctaaaaca |
261 |
Q |
| |
|
|||| ||||||||||||||| ||| |||||||||||||||||||| |||||||| | ||| ||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
12981424 |
gtcatgaagccgacaataaatacggaaaagccgactgttgttgccgaagatgatttacgaatgaaagctgataacaagaaggcaaacccagtctaaaaca |
12981325 |
T |
|
| Q |
262 |
aaaggagaaaatactaggaatcagaaaaa--atc---ttcagat-tcacagaatagacccaaatgnnnnnnncagaaagtataaattgtaaagctagaag |
355 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||| |||| || |||||| ||||||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
12981324 |
aaaggagaaaatactaggcatcagaaaaaccatcaaattcacataatacagaacagacccagatg-aaaagacagaaagtataaatggtaaagctagaag |
12981226 |
T |
|
| Q |
356 |
attctcaccatgttaaattcaaatag |
381 |
Q |
| |
|
|||||||||||| | | ||||||||| |
|
|
| T |
12981225 |
attctcaccatgctgagttcaaatag |
12981200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 441 - 530
Target Start/End: Original strand, 45892869 - 45892958
Alignment:
| Q |
441 |
tcatgccacagagaactacgagaatagatgataggagtgtaacaactgtttcccaggttagccatgataaccagtatgcagagtcgtaaa |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45892869 |
tcatgccacagagaactacgagaatagatgataggagtgtaacaactgtttcccaggttagccatgataaccagtatgcagagtcgtaaa |
45892958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 442 - 530
Target Start/End: Complemental strand, 12981139 - 12981051
Alignment:
| Q |
442 |
catgccacagagaactacgagaatagatgataggagtgtaacaactgtttcccaggttagccatgataaccagtatgcagagtcgtaaa |
530 |
Q |
| |
|
||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12981139 |
catgccagtgagaactaagagaagagatgatatgattgtaacaactgtttcccaggttagccatgataaccagtatgcagagtcgtaaa |
12981051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 11 - 192
Target Start/End: Original strand, 20273365 - 20273546
Alignment:
| Q |
11 |
cagagaagatataattgtaaggaaatcctacttgcaccacgagctgcaagtcgataaaataacagacataaaagaacatgagcatccattgttttcaatg |
110 |
Q |
| |
|
|||||||||||| |||||||||||||| | || |||| ||||||||| || ||||||| ||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
20273365 |
cagagaagatatttgtgtaaggaaatcctgcgtgtaccatgagctgcaaatcaataaaattgaagacaaaaaagaacacgagcatccattgttttcaatg |
20273464 |
T |
|
| Q |
111 |
tactcaataaaccatgtcctgaaagaatgagaagtgttggttcatgcctgagtcacatagccgacaataaatatggagaagc |
192 |
Q |
| |
|
|| |||||||||| |||||||||||| |||||||||||||||||||| ||||||||| |||||| ||||||||||||||||| |
|
|
| T |
20273465 |
taatcaataaaccttgtcctgaaagactgagaagtgttggttcatgcatgagtcacaaagccgataataaatatggagaagc |
20273546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 268
Target Start/End: Original strand, 20273553 - 20273592
Alignment:
| Q |
229 |
ccgataacatgaaggccaacccagtctaaaacaaaaggag |
268 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
20273553 |
ccgataacatgaaggccaacctagtctataacaaaaggag |
20273592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University