View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12224_high_4 (Length: 301)
Name: NF12224_high_4
Description: NF12224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12224_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 32 - 287
Target Start/End: Original strand, 22575457 - 22575711
Alignment:
| Q |
32 |
aacagtcgttaatattttctatgttaacatgacacaaatctgatgtgtggattcttgtaattctacgctttattgaaatttcttttcaatcattcatgtt |
131 |
Q |
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| T |
22575457 |
aacagtcgttaatattttct-tgttaacatgacacaaatctgatgtgtggattcttgtaattctacgctttattgaaatttcttttcaatcattcatgtt |
22575555 |
T |
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| Q |
132 |
gttgttcttgttttattatttgttgctttctttctcgttcctcgtcttgcgtttcaagctattgtctttataccctttgtttattcatttaaatttcttt |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22575556 |
gttgttcttgttttattatttgttgctttctttctcgttcctcgtcttccgtttcaagctattgtctttataccctttgtttagtcatttaaatttcttt |
22575655 |
T |
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| Q |
232 |
tttatcaatgtgcactcaaatttttgtccaagaatctttcgtcaaagtcattcaca |
287 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22575656 |
tttatcaatgtgcactcaaatttttgtccaagaatctttcgtcaaagtcattcaca |
22575711 |
T |
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