View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12224_low_1 (Length: 567)
Name: NF12224_low_1
Description: NF12224
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12224_low_1 |
 | |
|
| [»] scaffold0557 (7 HSPs) |
| | |
|
| [»] scaffold0442 (6 HSPs) |
| | |
|
| [»] scaffold0115 (5 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 510; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 20 - 549
Target Start/End: Complemental strand, 21006132 - 21005603
Alignment:
| Q |
20 |
ctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgtttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21006132 |
ctctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgtttt |
21006033 |
T |
|
| Q |
120 |
gttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttcttctctggttgatcaacacc |
219 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
21006032 |
gttgaacactttcaggatagatttgacgctgcatgttttgattgacattgtgatttggaatcatagtactcatgttgttcttctctggttgatcaacacc |
21005933 |
T |
|
| Q |
220 |
aggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacactactagga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21005932 |
aggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacactactagga |
21005833 |
T |
|
| Q |
320 |
gttgaaaccatagcaatcatgacggtgttgttcttctcctgttgaacacttgcaggatagatttgaggcttaaagttttggataacaacaagaggagttg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21005832 |
gttgaaaccatagcaatcatgacggtgttattcttctcctgttgaacacttgcagggtagatttgaggcttaaagttttggataacaacaagaggagttg |
21005733 |
T |
|
| Q |
420 |
gaataatgttggcaggtgaaataacattcatgtttgtgtttttattcacacaaccatttgatcaacatgtattgaatagacctttccgtcgatgtgggag |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21005732 |
gaataatgttggcaggtgaaataacattcatgtttgtgtttttattcacacaaccatttgatcaacatgtattgaatagacctttccgtcgatgtgggag |
21005633 |
T |
|
| Q |
520 |
tatttctaatgtcccttttcttagtggcca |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
21005632 |
tatttctaatgtcccttttcttagtggcca |
21005603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 21 - 202
Target Start/End: Complemental strand, 20903415 - 20903234
Alignment:
| Q |
21 |
tctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttg |
120 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20903415 |
tctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctg |
20903316 |
T |
|
| Q |
121 |
ttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttcttc |
202 |
Q |
| |
|
|||||||||| | | ||||||||| | |||||| ||| ||| ||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
20903315 |
ttgaacacttccggtgtagatttgatgttgcatgctttgattaacaccctgatttggaatcatagtactcatgttgttcttc |
20903234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 20922015 - 20921838
Alignment:
| Q |
21 |
tctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttg |
120 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20922015 |
tctgttgttgatgaacacttgaagtgtagacctgaggatgcaagttt------acactaggagttggaaccatagtactcatgatggtgttcttgttctg |
20921922 |
T |
|
| Q |
121 |
ttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttcttctc |
204 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||||| ||| ||||| | |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20921921 |
ttgaacacttccagtgtagatttgacgatgcatgctttgattgataccgtgatttggaatcatagtactcatgttgttcttctc |
20921838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 21 - 211
Target Start/End: Complemental strand, 41336573 - 41336383
Alignment:
| Q |
21 |
tctgttcttgatgaacacttgaagtgtaaacttgaggttgcatgttagaattaacactaggagttggaaccatagtactcatgatggtgttcttgttttg |
120 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41336573 |
tctgttgttgatgaacacttgaagtgtagacttgaggatgcaagttttgattaacaccaggagttggaaccatagtactcatgatggtgttcttgttctg |
41336474 |
T |
|
| Q |
121 |
ttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgatttggaatcatagtactcgtgttgttcttctctggttga |
211 |
Q |
| |
|
|||||||||| ||| ||||||||||| |||||| ||| ||||||| |||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
41336473 |
ttgaacacttccagtgtagatttgacgatgcatgctttgattgacaccgtgatttggaatcatagtactcatgttgttcttctctggttga |
41336383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 311
Target Start/End: Complemental strand, 41336527 - 41336427
Alignment:
| Q |
208 |
ttgatcaacaccaggatgtggaatcatcgtactcttgagggtgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattc |
307 |
Q |
| |
|
||||| |||||||||| ||||| ||| |||||| ||| |||||| |||||| |||||||||||| || |||||||||| | |||||| ||||||| |
|
|
| T |
41336527 |
ttgattaacaccaggagttggaaccatagtactcatgatggtgtt---cttgttctgttgaacacttccagtgtagatttgacgatgcatgctttgattg |
41336431 |
T |
|
| Q |
308 |
acac |
311 |
Q |
| |
|
|||| |
|
|
| T |
41336430 |
acac |
41336427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 91; Significance: 8e-44; HSPs: 7)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 70 - 204
Target Start/End: Original strand, 5847 - 5981
Alignment:
| Q |
70 |
attaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||| ||| ||| | |
|
|
| T |
5847 |
attaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgacgttgcatgctttgattaacaccg |
5946 |
T |
|
| Q |
170 |
tgatttggaatcatagtactcgtgttgttcttctc |
204 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
5947 |
taatttggaatcatagtactcatgttgttcttctc |
5981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 5205 - 5071
Alignment:
| Q |
70 |
attaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattg |
169 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||| |||| ||| ||| ||| || |
|
|
| T |
5205 |
attaacacttggagttggaaccatagtactcacgatggtgttcttgttttgttgaacacttctagggtagatttgacgctacatgctttaattaacactg |
5106 |
T |
|
| Q |
170 |
tgatttggaatcatagtactcgtgttgttcttctc |
204 |
Q |
| |
|
|||||| ||||||||||| || ||||||||||||| |
|
|
| T |
5105 |
tgatttagaatcatagtattcatgttgttcttctc |
5071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 5969 - 6031
Alignment:
| Q |
249 |
tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac |
311 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||| | |||||||||||||| |||| |
|
|
| T |
5969 |
tgttgttcttctcctgttgaacacttgcatggtagatttgatggtgcatgttttgattaacac |
6031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 5885 - 5944
Alignment:
| Q |
252 |
tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac |
311 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| | |||||| ||||||| |||| |
|
|
| T |
5885 |
tgttcttgttttgttgaacacttccagggtagatttgacgttgcatgctttgattaacac |
5944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 5969 - 6009
Alignment:
| Q |
345 |
tgttgttcttctcctgttgaacacttgcaggatagatttga |
385 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
5969 |
tgttgttcttctcctgttgaacacttgcatggtagatttga |
6009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 5083 - 5021
Alignment:
| Q |
249 |
tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac |
311 |
Q |
| |
|
|||||||||| | |||||||||||| ||| |||||||||| | |||||||||||||| |||| |
|
|
| T |
5083 |
tgttgttcttctcatgttgaacactttcattgtagatttgatggtgcatgttttgattaacac |
5021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 5167 - 5107
Alignment:
| Q |
252 |
tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacact |
312 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||| ||| |||| ||| ||| ||||| |
|
|
| T |
5167 |
tgttcttgttttgttgaacacttctagggtagatttgacgctacatgctttaattaacact |
5107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 86; Significance: 8e-41; HSPs: 6)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 9241 - 9374
Alignment:
| Q |
70 |
attaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattg |
169 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| | |||||| ||| ||| ||| | |
|
|
| T |
9241 |
attaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacacttccagggtagatttgaagttgcatgctttgattaacaccg |
9340 |
T |
|
| Q |
170 |
tgatttggaatcatagtactcgtgttgttcttct |
203 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||| |
|
|
| T |
9341 |
taatttggaatcatagtactcatgttgttcttct |
9374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 74 - 204
Target Start/End: Complemental strand, 8566 - 8436
Alignment:
| Q |
74 |
acactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattgtgat |
173 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||| |||||| ||| ||| ||| ||||| |
|
|
| T |
8566 |
acactaggagtttgaaccatagtactcacaatggtgttcttgttttgttgaacacttctagggttgatttgacgttgcatgctttaattaacaccgtgat |
8467 |
T |
|
| Q |
174 |
ttggaatcatagtactcgtgttgttcttctc |
204 |
Q |
| |
|
|| ||||||||||| || ||||||||||||| |
|
|
| T |
8466 |
ttagaatcatagtattcatgttgttcttctc |
8436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 249 - 311
Target Start/End: Original strand, 9363 - 9425
Alignment:
| Q |
249 |
tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac |
311 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||| | |||||||||||||| |||| |
|
|
| T |
9363 |
tgttgttcttctactgttgaacacttgcatggtagatttgatggtgcatgttttgattaacac |
9425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 9279 - 9338
Alignment:
| Q |
252 |
tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac |
311 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||| | |||||| ||||||| |||| |
|
|
| T |
9279 |
tgttcttgttttgttgaacacttccagggtagatttgaagttgcatgctttgattaacac |
9338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 8448 - 8386
Alignment:
| Q |
249 |
tgttgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac |
311 |
Q |
| |
|
|||||||||| | |||||||||||| ||||||||||||| | |||||||||||||| |||| |
|
|
| T |
8448 |
tgttgttcttctcatgttgaacacttttatggtagatttgatggtgcatgttttgattaacac |
8386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 345 - 385
Target Start/End: Original strand, 9363 - 9403
Alignment:
| Q |
345 |
tgttgttcttctcctgttgaacacttgcaggatagatttga |
385 |
Q |
| |
|
|||||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
9363 |
tgttgttcttctactgttgaacacttgcatggtagatttga |
9403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 70 - 204
Target Start/End: Complemental strand, 47058 - 46924
Alignment:
| Q |
70 |
attaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacgctgcatgtttttattgacattg |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| ||| ||||||||||| |||||| ||| ||| ||| | |
|
|
| T |
47058 |
attaacactaggagttggaaccatagtactcacgatgatgttcttgtattgttgaacacttccagggtagatttgacgttgcatgctttgattaacaccg |
46959 |
T |
|
| Q |
170 |
tgatttggaatcatagtactcgtgttgttcttctc |
204 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| |
|
|
| T |
46958 |
tgatttggaatcatggtactcatgttgttcttctc |
46924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 70 - 147
Target Start/End: Original strand, 47962 - 48039
Alignment:
| Q |
70 |
attaacactaggagttggaaccatagtactcatgatggtgttcttgttttgttgaacactttcagaatagatttgacg |
147 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
47962 |
attaacactaggagttggaaccataatactcacgatggtgttcttgttttgttgaacacttacaagctagatttgacg |
48039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 385
Target Start/End: Complemental strand, 46936 - 46896
Alignment:
| Q |
345 |
tgttgttcttctcctgttgaacacttgcaggatagatttga |
385 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
46936 |
tgttgttcttctcctgttgaacacttgcatggtagatttga |
46896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 47020 - 46961
Alignment:
| Q |
252 |
tgttcttgttttgttgaacacttgcatggtagatttgaggctgcatgttttgattcacac |
311 |
Q |
| |
|
||||||||| ||||||||||||| || ||||||||||| | |||||| ||||||| |||| |
|
|
| T |
47020 |
tgttcttgtattgttgaacacttccagggtagatttgacgttgcatgctttgattaacac |
46961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 46936 - 46896
Alignment:
| Q |
249 |
tgttgttcttgttttgttgaacacttgcatggtagatttga |
289 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
46936 |
tgttgttcttctcctgttgaacacttgcatggtagatttga |
46896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University