View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12225_high_3 (Length: 279)
Name: NF12225_high_3
Description: NF12225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12225_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 21199500 - 21199765
Alignment:
| Q |
1 |
taccttacacaggaaattatgttggatcttgtgttccatcaaatctgaatatgccatgataaatttcattnnnnnnntcgaataaaattgacaaataact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
21199500 |
taccttacacaggaaattatgttggatcttgtgttccatcaaatctgaatatgccatgataaatttcattaaaaaaatcgaataaaattgacaaataact |
21199599 |
T |
|
| Q |
101 |
ttagaaacttatcattgcaatagtcaaatgatggctatgaggttgttctagccagtcacgaaaggctgtcatcccacgtccactctcttggcgtcccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21199600 |
ttagaaacttatcattgcaatagtcaaatgatggctatgaggttgttctagccagtcacgaaaggctgtcatcccacgtccactctcttggcgtcccttt |
21199699 |
T |
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| Q |
201 |
ctttcacccacttgtaaaatctcgttgaagtcccccattaccataaacggatatgctgcacgcctt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21199700 |
ctttcacccacttgtaaaatctcgttgaagtcccccattaccataaacggatatgctgcacgcctt |
21199765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 152
Target Start/End: Complemental strand, 2948465 - 2948312
Alignment:
| Q |
3 |
ccttacacaggaaattatgttggatcttgtgttccatcaaatctgaatatgccatgataaatttcattnnnnnnn----tcgaataaaattgacaaataa |
98 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2948465 |
ccttacacagaaaattatcttggatcttgtgttccatcaaatgtgaatatgccatgataaatttcattaaaaaaaaaaatcgaataaaattgacaaataa |
2948366 |
T |
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| Q |
99 |
ctttagaaacttatcattgcaatagtcaaatgatggctatgaggttgttctagc |
152 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
2948365 |
ctttagaaacttaacattgcaatagtcaaatgatggctatgagcctgttctagc |
2948312 |
T |
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