View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12225_low_1 (Length: 436)
Name: NF12225_low_1
Description: NF12225
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12225_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 8e-99; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 242 - 428
Target Start/End: Original strand, 12740347 - 12740533
Alignment:
| Q |
242 |
ctacagaccaatagcagaataggggtcaattggtctatcagaatcaacagttacaagcacagttatactgttgagtgcattcagcaaagcccttgccaga |
341 |
Q |
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| T |
12740347 |
ctacagaccaatagcagaataggggtcaattggtctatcagaatcaacagttacaagcacagttatactgttgagtgcattcagcaaagcccttgccaga |
12740446 |
T |
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| Q |
342 |
gtttacaccagggccttcagttttgaaaatggaacaactccacccttcaccacatttgcagaatgtttcactgccattgtctctgct |
428 |
Q |
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| T |
12740447 |
gtttacaccagggccttcagttttgaaaatggaacaactccacccttcaccacatttgcagaatgtttcactgccattgtcactgct |
12740533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 242 - 428
Target Start/End: Original strand, 12803171 - 12803357
Alignment:
| Q |
242 |
ctacagaccaatagcagaataggggtcaattggtctatcagaatcaacagttacaagcacagttatactgttgagtgcattcagcaaagcccttgccaga |
341 |
Q |
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| T |
12803171 |
ctacagaccaatagcagaataggggtcaattggtctatcagaatcaacagttacaagcacagttatactgttgagtgcattcagcaaagcccttgccaga |
12803270 |
T |
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| Q |
342 |
gtttacaccagggccttcagttttgaaaatggaacaactccacccttcaccacatttgcagaatgtttcactgccattgtctctgct |
428 |
Q |
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| T |
12803271 |
gtttacaccagggccttcagttttgaaaatggaacaactccacccttcaccacatttgcagaatgtttcactgccattgtcactgct |
12803357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 12803000 - 12803161
Alignment:
| Q |
15 |
atcaattttaacgttcaattttcttttatatgaatgtatcgaaacataaatatacgtttacatcaactcatttttaacctgaaataatgcataccaattt |
114 |
Q |
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| T |
12803000 |
atcaattttaacgttcaatttt-ttttatatgaatgtatcgaaacataaataaatgtttacatcaactcatttttaacctgaaataatgcataccaattt |
12803098 |
T |
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| Q |
115 |
atttatttttagatcacacaaccaaacatacacactgctgcttaagttacaaacatgtagcaa |
177 |
Q |
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| T |
12803099 |
atttatttttagatcacacaaccaaacatacacactgctgcttaagttacaaacatgtagcaa |
12803161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 12740177 - 12740337
Alignment:
| Q |
15 |
atcaattttaacgttcaattttcttttatatgaatgtatcgaaacataaatatacgtttacatcaactcatttttaacctgaaataatgcataccaattt |
114 |
Q |
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| T |
12740177 |
atcaattttaacgttcaatttt--tttatatgaatgtatcgaaacataaataaatgtttacatcaactcatttttaacctgaaataatgcataccaattt |
12740274 |
T |
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| Q |
115 |
atttatttttagatcacacaaccaaacatacacactgctgcttaagttacaaacatgtagcaa |
177 |
Q |
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| T |
12740275 |
atttatttttagatcacacaaccaaacatacacactgctgcttaagttacaaacatgtagcaa |
12740337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 284 - 422
Target Start/End: Original strand, 12732882 - 12733020
Alignment:
| Q |
284 |
atcaacagttacaagcacagttatactgttgagtgcattcagcaaagcccttgccagagtttacaccagggccttcagttttgaaaatggaacaactcca |
383 |
Q |
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| T |
12732882 |
atcaacatttacaatcacagttatattgttgagtgcaatcagcaaatcccttgcctgagtctgcatcaggaccttcagtcctaaaaatggaacaactcca |
12732981 |
T |
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| Q |
384 |
cccttcaccacatttgcagaatgtttcactgccattgtc |
422 |
Q |
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| T |
12732982 |
tccttcaccacacttgcagaatgtttcactgccattgtc |
12733020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 284 - 422
Target Start/End: Original strand, 12795684 - 12795822
Alignment:
| Q |
284 |
atcaacagttacaagcacagttatactgttgagtgcattcagcaaagcccttgccagagtttacaccagggccttcagttttgaaaatggaacaactcca |
383 |
Q |
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||||||| |||||| |||||||||| ||||||||||| |||||||| |||||||| |||| | || |||| |||||||| | ||||||||||||||||| |
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| T |
12795684 |
atcaacatttacaatcacagttatattgttgagtgcaatcagcaaatcccttgcctgagtctgcatcaggaccttcagtcctaaaaatggaacaactcca |
12795783 |
T |
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| Q |
384 |
cccttcaccacatttgcagaatgtttcactgccattgtc |
422 |
Q |
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| T |
12795784 |
tccttcaccacacttgcagaatgtttcactgccattgtc |
12795822 |
T |
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