View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12226_high_1 (Length: 527)
Name: NF12226_high_1
Description: NF12226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12226_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Complemental strand, 38287812 - 38287321
Alignment:
| Q |
18 |
tgaactaataaattgttgtttattcaattnnnnnnnnt-gttgtacaaattaacannnnnnnaatgacatgtccaagttaatatgtaagtcgttttttcc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38287812 |
tgaactaataaattgttgtttattcaattaaaaaaaattgttgtacaaattaacatttttttaatgacatgtccaagttaatatgtaagtcgttttttct |
38287713 |
T |
|
| Q |
117 |
agtaacaaattttgcattcctaatcaagcaatagaactcaagtggttaatgaatttcagcaaagacgaatcgttcgaaagaatccgaattcgattcctaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||||||||||| ||| |
|
|
| T |
38287712 |
agtaacaaattttgcattcctaatcaagcaatagaactcaagtggttaatgagtttcagcaatgacgaatcgtttggaagaatccgaattcgattcttaa |
38287613 |
T |
|
| Q |
217 |
gttaaacaattattggttagattatccttgcctgatgaccgaacctctttttcctgagaaaccagagggttaacacnnnnnnntattgcattcttaattt |
316 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
38287612 |
gttaaacaattattgattagattatccttgtctgatgaccgaacctcttttttctgagaaaccagagggttaacac-aaaaaatattgcattcttaattt |
38287514 |
T |
|
| Q |
317 |
acgagtatattttctcctgacatgaatgtgtgtgtatttgtgtgtctatatatgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaa |
416 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38287513 |
acgagtatattttctcctg-catgaatgtgtgtttatttgtgtgtctatatacgtattaaggaaaatggaaaagggtagagtagtaccactcctatacaa |
38287415 |
T |
|
| Q |
417 |
tttggaaccagtacaaagtgatatcatacgcacagac--nnnnnnnnnggaaagccaaatcccatatctaagcaataatcaaccgggttcacat |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38287414 |
tttggaaccagtacaaagtgatatcatacgcacagacaaaaaaaaaaaggaaagccaaatcccatatctaagcaataatcaaccgggttcacat |
38287321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 39843995 - 39844041
Alignment:
| Q |
153 |
ctcaagtggttaatgaatttcagcaaagacgaatcgttcgaaagaat |
199 |
Q |
| |
|
|||||||||| |||||| |||| |||||||||||| ||||||||||| |
|
|
| T |
39843995 |
ctcaagtggtaaatgaacttcaccaaagacgaatcattcgaaagaat |
39844041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 141 - 189
Target Start/End: Complemental strand, 13043549 - 13043501
Alignment:
| Q |
141 |
caagcaatagaactcaagtggttaatgaatttcagcaaagacgaatcgt |
189 |
Q |
| |
|
|||||||| || |||||||||||||||| ||||| ||| |||||||||| |
|
|
| T |
13043549 |
caagcaattgagctcaagtggttaatgagtttcatcaaggacgaatcgt |
13043501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 211
Target Start/End: Original strand, 34548528 - 34548585
Alignment:
| Q |
154 |
tcaagtggttaatgaatttcagcaaagacgaatcgttcgaaagaatccgaattcgatt |
211 |
Q |
| |
|
||||||| |||||||| |||| ||||||||| ||||||| || || |||||||||||| |
|
|
| T |
34548528 |
tcaagtgattaatgaacttcatcaaagacgagtcgttcggaataacccgaattcgatt |
34548585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 24363805 - 24363853
Alignment:
| Q |
153 |
ctcaagtggttaatgaatttcagcaaagacgaatcgttcgaaagaatcc |
201 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||||| | |||||||| |
|
|
| T |
24363805 |
ctcaagtggttaattaatttcaccaaggacgaatcgtttggaagaatcc |
24363853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 231
Target Start/End: Original strand, 8509644 - 8509732
Alignment:
| Q |
143 |
agcaatagaactcaagtggttaatgaatttcagcaaagacgaatcgttcgaaagaatccgaattcgattcctaagttaaacaattattg |
231 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||| ||| || |||| ||| | ||||||| |||||||||| || | |||||||||||| |
|
|
| T |
8509644 |
agcaatcgaactcaagtagttaatgagtttcatcaatgatgaattgtttgggagaatccaaattcgattcttagataaaacaattattg |
8509732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University