View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12226_high_3 (Length: 214)
Name: NF12226_high_3
Description: NF12226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12226_high_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 36691338 - 36691551
Alignment:
| Q |
1 |
tctttccagatcctatgttttggttcacatcattattcataaacatggcccctccaaaattggatattttcggctcaaaagtgttccctagcaagataca |
100 |
Q |
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| T |
36691338 |
tctttccagatcctatgttttggttcacatcattattcataaacatggcccctccaaaattggatattttgggctcaaaagtgttccctagcaagataca |
36691437 |
T |
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| Q |
101 |
ctcggagcttatattaagatgaaccatatgcaagctatgatggaggcaacataaacctcttgctatcccaagtgcaatttgaataacccttgaccatcct |
200 |
Q |
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| T |
36691438 |
ctcggagcttatattaagatgaaccatatgcaagctatgatggaggcaacataaacctcttgctatcccaagtgcaatttgaataacccttgaccatcct |
36691537 |
T |
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| Q |
201 |
agtgttgtagtatc |
214 |
Q |
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|||||| ||||||| |
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| T |
36691538 |
agtgttttagtatc |
36691551 |
T |
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Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 23655032 - 23655218
Alignment:
| Q |
11 |
tcctatgttttggttcacatcattattcataaacatggcccctccaaaattggatattttcggctcaaaagtgttccctagcaagatacactcggagctt |
110 |
Q |
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| T |
23655032 |
tcctatgtttttttccagatcattattcataaacatgatccctccgaaattggatatctttggctcaaaatttttccctaacaagatacagtcagaattt |
23655131 |
T |
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| Q |
111 |
atattaagatgaaccatatgcaagctatgatggaggcaacataaacctcttgctatcccaagtgcaatttgaataacccttgaccat |
197 |
Q |
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| T |
23655132 |
atattgagatggagcatatgcaagctatgatggaggcaacataagcctcttgctacaccaagtgcaattttaataacctttgaccat |
23655218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 23803538 - 23803352
Alignment:
| Q |
11 |
tcctatgttttggttcacatcattattcataaacatggcccctccaaaattggatattttcggctcaaaagtgttccctagcaagatacactcggagctt |
110 |
Q |
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||||||||||| | || ||||||||||||||||||| |||||| ||||||||||| || ||||||||| | ||||||| ||||||||| || || || |
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| T |
23803538 |
tcctatgtttttttccagatcattattcataaacatgatccctccgaaattggatatctttggctcaaaatttttccctaacaagatacagtcagaattt |
23803439 |
T |
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| Q |
111 |
atattaagatgaaccatatgcaagctatgatggaggcaacataaacctcttgctatcccaagtgcaatttgaataacccttgaccat |
197 |
Q |
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| T |
23803438 |
atattgagatggagcatatgcaagctatgatggaggcaacataagcctcttgctacaccaagtgcaattttaataacctttgaccat |
23803352 |
T |
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