View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12226_low_2 (Length: 467)
Name: NF12226_low_2
Description: NF12226
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12226_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 13 - 451
Target Start/End: Original strand, 24879392 - 24879830
Alignment:
| Q |
13 |
gaaaacctttatttccaatatgctctcccctttctttggtaaattataggctaaactactttaatttgattaattggtagtaatatttcaaaatcatttg |
112 |
Q |
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| T |
24879392 |
gaaaacctttatttccaatatgctctcccctttctttggtaaattatagggtaaactactttaatttgattaattggtagtgatatttcaaaattatttg |
24879491 |
T |
|
| Q |
113 |
aaactccaacaatgaaagactatgatatcacctatccgaagttgaagctcctatctcgcataccacctttgcagtccacaatagaatttgtggtcaagag |
212 |
Q |
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|||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24879492 |
aaactccaacaatgaaagactatgatgtcacttattcgaagttgaagctcctatctcgcataccacctttgcagtccacaatagaatttgtgttcaagag |
24879591 |
T |
|
| Q |
213 |
tcaaccacatattttaacttttaaacttatctcattatcattgacacttaccggattatctctctccgcggacattttaggtaacacattgcaaatttgc |
312 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24879592 |
tcaaccacatattttaacttttgaatttatctcattatcattgacatttactgaattatctctctccgcggacattttaggtaacacattgcaaatttgc |
24879691 |
T |
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| Q |
313 |
aaaccaccattactttttgatatgacctgatcagcaaaacgatgtctgatatatggtgagttgttgtcttcgccagcttcgaatggtaggggaggggatg |
412 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24879692 |
aaaccaccgttactttttgatatgacctgatcaacaaaacgatgtttgatatatggtgagttgttgtcttcgcaagcttcgaatggtaggggaggggatg |
24879791 |
T |
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| Q |
413 |
gtggggtttacttgcaggcactaagaatgttttaaggca |
451 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |
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| T |
24879792 |
gtggggtgtacttgcaggcactaagaatgttttaaggca |
24879830 |
T |
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