View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12227_high_1 (Length: 464)
Name: NF12227_high_1
Description: NF12227
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12227_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 14 - 448
Target Start/End: Original strand, 32802976 - 32803410
Alignment:
| Q |
14 |
gtggagcaggaccaggtagaaatgtcccggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagt |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32802976 |
gtggagcaggaccaggtagaaatgtcccggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagt |
32803075 |
T |
|
| Q |
114 |
aacattagctacagagccacttccactgagaacacaaacaccgcgttgacgccttcttgcgaattgtgctacactttctgctatatcagctccaccagct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32803076 |
aacattagctacagagccacttccactgagaacacaaacaccgcgttgacgcctccttgcgaattgtgctacactttctgctatatcagctccaccggct |
32803175 |
T |
|
| Q |
214 |
acctccatgacatggctcttcaaagcatttgggctatctcttgttacaaagataggtggttttggtctgtttttggatccaggtggtcttcctcttggtc |
313 |
Q |
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| T |
32803176 |
acctccatgacatggctcttcaaagcatttgggctatctcttgttacaaagataggtggttttggtctgtttttggatccaggtggtcttcctcttggtc |
32803275 |
T |
|
| Q |
314 |
ttcggttaccaacttcgactgcaccttctctaggttcatctctgttgtcatcgtcttcttcttcttcatcgtgattttcgttgattgttaggtttgtgtt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
32803276 |
ttcggttaccaacttcgactgcaccttctctaggttcatctctgttgtcatcgtcttcttcttcatcatcgtgattttcgttgatcgttaggtttgtgtt |
32803375 |
T |
|
| Q |
414 |
gtggtgtttgtttaaaccacttggggagtgggttc |
448 |
Q |
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| T |
32803376 |
gtggtgtttgtttaaatcacttggggagtgggttc |
32803410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 16 - 353
Target Start/End: Complemental strand, 16578917 - 16578580
Alignment:
| Q |
16 |
ggagcaggaccaggtagaaatgtcccggttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaa |
115 |
Q |
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|||||||| || |||||||| | |||||||| || | ||| |||||||| ||||||||||||||||| || || || |||| |||||||||||| |||| |
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| T |
16578917 |
ggagcaggtcctggtagaaaagctccggttaatgatagaatatcaaaccttccatgaagtgctacaacagctcctggtgctgcaggttgtctaagggtaa |
16578818 |
T |
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| Q |
116 |
cattagctacagagccacttccactgagaacacaaacaccgcgttgacgccttcttgcgaattgtgctacactttctgctatatcagctccaccagctac |
215 |
Q |
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| T |
16578817 |
catttgcaactgatccactaccgcttagaacacaaaccccgcgttgtcgccttcttgcaaactgggctacactttcggctacatctgctccggaggatac |
16578718 |
T |
|
| Q |
216 |
ctccatgacatggctcttcaaagcatttgggctatctcttgttacaaagataggtggttttggtctgtttttggatccaggtggtcttcctcttggtctt |
315 |
Q |
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| T |
16578717 |
ttccatcacatggcttttcagtgaatttggactgtctcttgttacgaagattggtggttttggtttgttttttgaaccgggtggtcttcctcttggtctt |
16578618 |
T |
|
| Q |
316 |
cggttaccaacttcgactgcaccttctctaggttcatc |
353 |
Q |
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||||| |||| ||| |||||||||||| | |||||||| |
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| T |
16578617 |
cggtttccaatttcaactgcaccttcttttggttcatc |
16578580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 184
Target Start/End: Original strand, 32809558 - 32809702
Alignment:
| Q |
43 |
gttaaggacaaaatctcaaacctgccatgaagtgctacaacggcaccaggagctgaaggttgtctaagagtaacattagc-----tacagagccacttcc |
137 |
Q |
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||||||||||||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32809558 |
gttaaggacaaaatctcaatcctg---tgaagtgctacaacagcaccaagagctgaaggttgtctaagagtaacattagctgctatacagagccacttcc |
32809654 |
T |
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| Q |
138 |
actgagaacacaaa-caccgcgttgacgccttcttgcgaattgtgcta |
184 |
Q |
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| T |
32809655 |
actaaaaaaaaaaagcaccacattgacgccttcttgcgaattgtgcta |
32809702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 281 - 391
Target Start/End: Original strand, 32809703 - 32809816
Alignment:
| Q |
281 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaacttcgactgcaccttctctaggttcatctctgttgtcatcgtctt---cttcttc |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| || |||| ||||| ||||||| |
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| T |
32809703 |
tgtttttggatccaggtggtcttcctcttggtcttcggttaccaatttcagttgcatcttctctaggttcatctcttttctcattgtcttcttcttcttc |
32809802 |
T |
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| Q |
378 |
ttcatcgtgatttt |
391 |
Q |
| |
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|||||||||||||| |
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| T |
32809803 |
ttcatcgtgatttt |
32809816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 3332386 - 3332434
Alignment:
| Q |
268 |
ggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
316 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||| |
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| T |
3332386 |
ggtggttttggtttgtttttggatccagctggtcttcctcttggtcttc |
3332434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 13212840 - 13212892
Alignment:
| Q |
264 |
gataggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
316 |
Q |
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| T |
13212840 |
gataggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttc |
13212892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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