View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12228_high_3 (Length: 493)
Name: NF12228_high_3
Description: NF12228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12228_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 45521377 - 45520902
Alignment:
| Q |
1 |
cttccccactactcttgcacgnnnnnnncctgacagaactcaatactctcttctttttcggacaataaagtttaannnnnnnngtggcttttaatttttg |
100 |
Q |
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| T |
45521377 |
cttccccaatactcttgcacgtttttttcctgacagatctcaatactctcttctttttcggacaataaagtttaattttttttgttgcttttaatttctg |
45521278 |
T |
|
| Q |
101 |
tgattaatttatcatttctcaaaaagaaagagtaaccagagtaaaataattgtttctcgattgcatgccttcaaggaaaaaatggaagnnnnnnnnngag |
200 |
Q |
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| T |
45521277 |
tgattaatttatcatttctcaaagagaaagagtaaccagagtaaaataattgtttgtcgattgcatgccttcaagcaaaaaatggaagaaaaaaaa-gag |
45521179 |
T |
|
| Q |
201 |
aagaaatttgattttgggtggttgtagtttgtgtagttgtgattgaaattttgaaactttaggttgaatggaaggagttaaaacacaagtgtggtgtatg |
300 |
Q |
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| T |
45521178 |
aagaaatttgattttgggtggttgtagtttgtgtagttgtgattgaaattttgaaactttgggttgaatgaaaggagttaaaacacaagtgtggtgtatg |
45521079 |
T |
|
| Q |
301 |
gtggtcgtagttgatgataaaagttacccaactgaatgttaatgcttccatagaaacaaataaaaatcaaaatataaac--tgacacgtaaatgaaagtc |
398 |
Q |
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| T |
45521078 |
gtggttgtagttgatgataaaagttacccaattgaatgttaatgcttccatagaaacagataaaaatcaaaatataaacagtgacacataaatgaaagcc |
45520979 |
T |
|
| Q |
399 |
tcacgcatgttaattacataaagggtgagacaaatgaggagtcaatctcatggaaggagaagaagagggaagagacc |
475 |
Q |
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| T |
45520978 |
tcacgcatgttaattacgtaaagggtgagacaaatgaggagtcaatctcatggaaggagaagaagagggaagagacc |
45520902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 198 - 475
Target Start/End: Complemental strand, 10566734 - 10566457
Alignment:
| Q |
198 |
gagaagaaatttgattttgggtggttgtagtttgtgtagttgtgattgaaattttgaaactttaggttgaatggaaggagttaaaacacaagtgtggtgt |
297 |
Q |
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| T |
10566734 |
gagaagaaatttgattttgggtggttgtagtttgtgtagttgtgattgaaattttgaaactttgggttgaatggaaggagttaaaacacaagtgtggtgt |
10566635 |
T |
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| Q |
298 |
atggtggtcgtagttgatgataaaagttacccaactgaatgttaatgcttccatagaaacaaataaaaatcaaaatataaactgacacgtaaatgaaagt |
397 |
Q |
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| T |
10566634 |
atggtggttgtagttgatgataaaagttacccaactgaatgttaatgcttctatagaaacaaataaaaatcaaaatataatttgacacgtaaatgaaagt |
10566535 |
T |
|
| Q |
398 |
ctcacgcatgttaattacataaagggtgagacaaatgaggagtcaatctcatggaaggagaagaagagggaagagacc |
475 |
Q |
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| T |
10566534 |
ctcacgcatgttaattacataaagggtgagacaaatgaggagtcaatctcatggaaggagaagaagagggaagagacc |
10566457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 10566873 - 10566757
Alignment:
| Q |
31 |
tgacagaactcaatactctcttctttttcggacaataaagtttaannnnnnnngtggcttttaatttttgtgattaatttatcatttctcaaaaagaaag |
130 |
Q |
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| T |
10566873 |
tgacagatctcaatactctcttctttttcggacaataaagtttaattttttttgttgcgtttaatttctgtgattaatttatcatttctcaaaaagaaag |
10566774 |
T |
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| Q |
131 |
agtaaccagagtaaaat |
147 |
Q |
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| T |
10566773 |
agtaaccagagtaaaat |
10566757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 8e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 134 - 431
Target Start/End: Original strand, 52727974 - 52728266
Alignment:
| Q |
134 |
aaccagagtaaaataattgtttctcgattgcatgccttcaaggaaaaaatggaagnnnnnnnnngagaagaaatttgattttgggtggttgtagtttgtg |
233 |
Q |
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|||||||||||||||||||||| || |||| ||||||||||| ||||| ||||| ||||| | ||||||||| |||||||||||||||||| |
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| T |
52727974 |
aaccagagtaaaataattgtttgtcaattgaatgccttcaagcaaaaattggaa-----aaaaggagaaaatatttgatttagggtggttgtagtttgtg |
52728068 |
T |
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| Q |
234 |
tagttgtgattgaaattttgaaactttaggttgaatggaaggagttaaaacacaagtgtggtgt-atggtggtcgtagttgatgataaaagttacccaac |
332 |
Q |
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|||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| |||||||| ||| |||||| | ||| ||| ||||| |
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| T |
52728069 |
tagttgtgattgaaattttgaagcttgggggtgaatggaaggagttaaaacacaagtgtggtgtgatggtggttgtatttgatgttgaaaatta-ccaac |
52728167 |
T |
|
| Q |
333 |
tgaatgttaatgcttccatagaaacaaataaaaatcaaaatataaac--tgacacgtaaatgaaagtctcacgcatgttaattacataaagggtgagaca |
430 |
Q |
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|||||| | ||||| |||||||||||||||||||||||||||| || ||| | |||||||||||||| ||||||||||||||||| || |||||| |
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| T |
52728168 |
agaatgtaagtgctttcatagaaacaaataaaaatcaaaatatacacagtgagaaagaaatgaaagtctca--catgttaattacataaaaggagagaca |
52728265 |
T |
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