View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12228_high_4 (Length: 436)
Name: NF12228_high_4
Description: NF12228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12228_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 5e-94; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 20082210 - 20082024
Alignment:
| Q |
51 |
tatgatctcaatcagagataaaagcaaggatagatgaaagaacacgaatcaatgagaattcatgaatcaagaatcagaaaaagaatataagtaacatttt |
150 |
Q |
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| T |
20082210 |
tatgatctcaatcagagataaaagcaaggatagatgaaagaacacgaataaatgagaattcatgaatcaagaatcagaaaaagaatataaataacatttt |
20082111 |
T |
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| Q |
151 |
ccctattttattttagaaaccactactttagtcaagcaatttcagcataataatttatatactttcaactcacttcttaagccatta |
237 |
Q |
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| T |
20082110 |
ccctatttaattttagaaaccactactttagtcaagcaatttcagcataataatttatatactttcaactcacttcttaagccatta |
20082024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 235 - 392
Target Start/End: Original strand, 20072955 - 20073110
Alignment:
| Q |
235 |
ttatgaactctacagattgcaaactttagaaagaatacaaaagtttccaccaatgtgtgtatcatgtttattgtttttgtcattaagattataatttatt |
334 |
Q |
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| T |
20072955 |
ttatgaactctgcaaattgcaaactttagaatgaatacgaaagttaccaccaatgtgtgtatcatgtttattgtttttgtcattaagattataatttctt |
20073054 |
T |
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| Q |
335 |
ttcatnnnnnnnnncataggtttacaataaatacggcttcgatgtccaaaggcttctt |
392 |
Q |
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| T |
20073055 |
ttcct--aaaaaaacataggtttacactaaatacggctttgatgtccaaaggcttctt |
20073110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 142 - 261
Target Start/End: Original strand, 20072805 - 20072919
Alignment:
| Q |
142 |
taacattttccctattttattttagaaaccactactttagtcaagcaatttcagcataataatttatatactttcaactcacttcttaagccattatgaa |
241 |
Q |
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| T |
20072805 |
taacatttttcttatttaattttagaaaccactactttagtcaagcaattccagcataataatttatatactttcaactcacttctttatcca-----aa |
20072899 |
T |
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| Q |
242 |
ctctacagattgcaaacttt |
261 |
Q |
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| T |
20072900 |
ctttacagattgcaaacttt |
20072919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 20083670 - 20083753
Alignment:
| Q |
230 |
agccattatgaactctacagattgcaaa-ctttagaaagaatacaaaagtttccaccaatgtgtgtatcatgtttattgttttt |
312 |
Q |
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| T |
20083670 |
agccattatgaactctacagattgcaaaactttagaatgaatacaaaagttgccacgaatgtgtgtatcatgtttattgttttt |
20083753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 20082991 - 20083070
Alignment:
| Q |
142 |
taacattttccctattttattttagaaaccactactttagtcaagcaatttcagcataataatttatatactttcaactca |
222 |
Q |
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| T |
20082991 |
taacattttccttatttaattttagaaaccacttctt-agtcaagcaattccagcataataatttaaatactttcaactca |
20083070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 323
Target Start/End: Complemental strand, 20082023 - 20081957
Alignment:
| Q |
254 |
caaactttagaaagaatacaaaagtttccaccaatgtgtgtatcatgtttattgtttttgtcattaagat |
323 |
Q |
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| T |
20082023 |
caaactttagaaagaatataaaagttt---ccagtgtgtgtatcctgtttattgttattgtcattgagat |
20081957 |
T |
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