View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12228_low_2 (Length: 646)
Name: NF12228_low_2
Description: NF12228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12228_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 28 - 628
Target Start/End: Original strand, 7244842 - 7245430
Alignment:
| Q |
28 |
caaagtggagtgatagctctcaagctgaatggattgatcaaaatcggaacgatgactttcaagctgaatggattggctgtgggacgggatcctaccttta |
127 |
Q |
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| T |
7244842 |
caaagtggagtgatagctctcaagctgaatggattgatcaaaatcggaacgatgactttctagctaaatggattgactgtggggcgggatcctaccttca |
7244941 |
T |
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| Q |
128 |
caatcttatggcctacatgccgtttaattaatgaattcttagnnnnnnnnnnnnnatgattagttttaccttgccttaatgtactcttgttggtgaatca |
227 |
Q |
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| T |
7244942 |
caatcttatggcctagatgccgtttaattaaagaattcttagttttttattttt-atgattagttttaccttgccttaatgtactcttgttggtgaatca |
7245040 |
T |
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| Q |
228 |
atgaaaactttattttggttgca-ttctatagtgattttttccattctgcatagtgttctataattgatggttgagtgattctgttcatcagatttcata |
326 |
Q |
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| T |
7245041 |
atgaaaactttattttggttgcaattctataatgattttttccattctacatagtgtact-taattgatggttgagtgattctgttcatcagatttcata |
7245139 |
T |
|
| Q |
327 |
aagatattacagaaaacgttgttatatatcaatattaaagtggtgacttttttatgcagacaagcctaattaattaatgatgatttaataacaatttttt |
426 |
Q |
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| T |
7245140 |
aagatattacagaaaacgttgttatatatcaatattaaagtggtgacttttttatgcagacaagcctaattaattaatgatgatttaataacaatttttt |
7245239 |
T |
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| Q |
427 |
atcaccccatagcctaacaataccacatcacattgtagttggacagtccaatagattttgaaaatattcattaatgtgattcttaccaaaaccgtatggg |
526 |
Q |
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| T |
7245240 |
atcaccccatagcctaacaataccacatcac-----------acagtccaatagattttgaaaatattcattaatgtgattcttacgaaaaccgtctggg |
7245328 |
T |
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| Q |
527 |
gaaagcacttcctttgttgcactcaattaagtaaagttatcactttgcagaaatatttagactatatcgggcttaagaaaggagcattggtttgtcagaa |
626 |
Q |
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| T |
7245329 |
gaaatcacttcctttgttgcactcaattaagtaaagttatcactttgcagaaatatttagactatatcgggcttaagaaaggagcattggtttgtcagaa |
7245428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 7323357 - 7323254
Alignment:
| Q |
62 |
tgatcaaaatcggaacgatgactttcaagctgaatggattggctgtgggacgggatcctacctttacaatcttatggcct-acatgccgtttaattaatg |
160 |
Q |
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||||||| | ||||| || ||||||| |||||| ||||||| ||| |||||||||||||||||| ||||||| ||||||| | |||||||||||| ||| |
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| T |
7323357 |
tgatcaagaccggaatgacgactttctagctgagtggattgactgcgggacgggatcctaccttcacaatctcatggcctaatatgccgtttaatctatg |
7323258 |
T |
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| Q |
161 |
aatt |
164 |
Q |
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|||| |
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| T |
7323257 |
aatt |
7323254 |
T |
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