View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12228_low_5 (Length: 393)

Name: NF12228_low_5
Description: NF12228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12228_low_5
NF12228_low_5
[»] chr7 (9 HSPs)
chr7 (2-379)||(7546267-7546641)
chr7 (18-68)||(25607581-25607631)
chr7 (18-66)||(25311-25359)
chr7 (18-66)||(317333-317381)
chr7 (17-65)||(14078410-14078458)
chr7 (17-65)||(14388438-14388486)
chr7 (17-65)||(36847886-36847934)
chr7 (17-65)||(48872649-48872697)
chr7 (17-65)||(48982511-48982559)
[»] chr8 (3 HSPs)
chr8 (5-65)||(34923885-34923945)
chr8 (18-66)||(10216107-10216155)
chr8 (18-66)||(22934346-22934394)
[»] chr5 (7 HSPs)
chr5 (17-65)||(35751570-35751618)
chr5 (17-66)||(4877346-4877395)
chr5 (5-46)||(20570170-20570211)
chr5 (17-66)||(27979871-27979920)
chr5 (18-66)||(1199716-1199764)
chr5 (18-66)||(37334559-37334607)
chr5 (18-66)||(37658046-37658094)
[»] chr4 (9 HSPs)
chr4 (5-65)||(26705642-26705702)
chr4 (5-65)||(56310040-56310099)
chr4 (17-65)||(4950568-4950616)
chr4 (18-66)||(6233075-6233123)
chr4 (18-66)||(8192962-8193010)
chr4 (17-65)||(16960259-16960307)
chr4 (17-65)||(35667256-35667304)
chr4 (18-66)||(46095461-46095509)
chr4 (18-66)||(47030454-47030502)
[»] chr6 (7 HSPs)
chr6 (13-59)||(1474156-1474202)
chr6 (18-68)||(25527784-25527834)
chr6 (18-66)||(5443065-5443113)
chr6 (17-65)||(10702324-10702372)
chr6 (17-65)||(12693899-12693947)
chr6 (17-65)||(21801992-21802040)
chr6 (18-66)||(34280653-34280701)
[»] chr3 (9 HSPs)
chr3 (18-68)||(4558089-4558139)
chr3 (17-65)||(3089806-3089854)
chr3 (18-66)||(10887767-10887815)
chr3 (17-65)||(11581892-11581940)
chr3 (18-66)||(14602081-14602129)
chr3 (17-65)||(18365253-18365301)
chr3 (18-66)||(22129744-22129792)
chr3 (18-66)||(32737142-32737190)
chr3 (18-66)||(37183135-37183183)
[»] chr2 (15 HSPs)
chr2 (17-59)||(3514856-3514898)
chr2 (18-68)||(35899192-35899242)
chr2 (5-66)||(552479-552540)
chr2 (85-126)||(38911345-38911386)
chr2 (5-46)||(41078150-41078191)
chr2 (17-65)||(5474677-5474725)
chr2 (17-65)||(7939966-7940014)
chr2 (17-65)||(11563672-11563720)
chr2 (17-65)||(15006483-15006531)
chr2 (17-65)||(17829104-17829152)
chr2 (18-66)||(20894252-20894300)
chr2 (17-65)||(33146675-33146723)
chr2 (17-65)||(34173099-34173147)
chr2 (17-65)||(37198977-37199025)
chr2 (18-66)||(38972518-38972566)
[»] scaffold2113 (1 HSPs)
scaffold2113 (18-66)||(781-829)
[»] scaffold0289 (1 HSPs)
scaffold0289 (17-65)||(3462-3510)
[»] scaffold0105 (1 HSPs)
scaffold0105 (18-66)||(19618-19666)
[»] chr1 (6 HSPs)
chr1 (5-65)||(8061067-8061127)
chr1 (17-65)||(29510451-29510499)
chr1 (17-65)||(31765975-31766023)
chr1 (18-66)||(38011825-38011873)
chr1 (18-66)||(41321567-41321615)
chr1 (17-65)||(43319969-43320017)


Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 2 - 379
Target Start/End: Complemental strand, 7546641 - 7546267
Alignment:
Q  2 tagcctcctcccttgtgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaattatgttcttctccagcaaaagatgattgaattat 101  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||    
T  7546641 tagcctcctcccttgtgttaaaatatacacccccctcctctcttaagaaaaa--tatttgaaaaattatgttcttctccggcaaaagatgattgaattat 7546544  T
Q  102 attccccttcctcttatgttaaaatctacccaccattttttataagacacactcccctctcttgtaaacatttccattttaatataatcaaacattatgc 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7546543 attccccttcctcttatgttaaaatctacccaccattttttataagacacactcccctctcttgtaaacatttccattttaatataatcaaacattatgc 7546444  T
Q  202 atatgtttttcttctattttgattcgcagtatcaataacatatatattatgttgccaaaaaacagatttacaaacatattattgagtggaagagagagta 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||    
T  7546443 atatgtttttcttctattttgattcgcagtatcaataacatatatattatgttacc-aaaaacagttttacaaacatattattgagtggaagagagagta 7546345  T
Q  302 gtcaggaagatattctttagaatctttttaagccatagtattggactcgcaacactgagagttgtatgaagcacaggt 379  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7546344 gtcaggaagatattctttagaatcattttaagccatagtattggactcgcaacactgagagttgtatgaagcacaggt 7546267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 25607631 - 25607581
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaatt 68  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||||    
T  25607631 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaatt 25607581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 25311 - 25359
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  25311 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 25359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 317333 - 317381
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  317333 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 317381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 14078410 - 14078458
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  14078410 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 14078458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 14388438 - 14388486
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  14388438 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 14388486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 36847886 - 36847934
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  36847886 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 36847934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 48872697 - 48872649
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  48872697 tgttaaaatatacacacccctcccctcttattcaaaacatattagaaaa 48872649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 48982559 - 48982511
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  48982559 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 48982511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 34923885 - 34923945
Alignment:
Q  5 cctcctcccttgtgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  34923885 cctcctctcttatgttaaaatatacactcccctcccctcttatttaaaacatattagaaaa 34923945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 10216155 - 10216107
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  10216155 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 10216107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 22934346 - 22934394
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  22934346 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 22934394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 35751570 - 35751618
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| |||||||||||||||  |||||||||| |||||    
T  35751570 tgttaaaatatacactcccctcccctcttaatcaaaacatattagaaaa 35751618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 4877395 - 4877346
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    ||||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  4877395 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 4877346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 20570170 - 20570211
Alignment:
Q  5 cctcctcccttgtgttaaaatatacacccccctcccctctta 46  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||    
T  20570170 cctcctctcttatgttaaaatatacactcccctcccctctta 20570211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 27979920 - 27979871
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    ||||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  27979920 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 27979871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 1199764 - 1199716
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  1199764 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 1199716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 37334607 - 37334559
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  37334607 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 37334559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 37658094 - 37658046
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  37658094 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 37658046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 26705702 - 26705642
Alignment:
Q  5 cctcctcccttgtgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  26705702 cctcctctcttatgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 26705642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 56310099 - 56310040
Alignment:
Q  5 cctcctcccttgtgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||   ||||||||||||||||    
T  56310099 cctcctctcttatgttaaaatatacac-cccctcccctcttattcaaaacatatttgaaaa 56310040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 4950616 - 4950568
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  4950616 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 4950568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 6233123 - 6233075
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  6233123 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 6233075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 8193010 - 8192962
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  8193010 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 8192962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 16960259 - 16960307
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  16960259 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 16960307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 35667304 - 35667256
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  35667304 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 35667256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 46095461 - 46095509
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  46095461 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 46095509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 47030502 - 47030454
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  47030502 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 47030454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 1474156 - 1474202
Alignment:
Q  13 cttgtgttaaaatatacacccccctcccctcttaagaaaaacatatt 59  Q
    ||||||| ||||||||||| | |||||||||||||| ||||||||||    
T  1474156 cttgtgtcaaaatatacactctcctcccctcttaagcaaaacatatt 1474202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 25527784 - 25527834
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaatt 68  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||||    
T  25527784 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaatt 25527834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 5443065 - 5443113
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  5443065 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 5443113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 10702324 - 10702372
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||| |||||||    
T  10702324 tgttaaaatatacactcccctcccctcttattcaaaacataattgaaaa 10702372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 12693899 - 12693947
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  12693899 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 12693947  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 21801992 - 21802040
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  21801992 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 21802040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 34280701 - 34280653
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  34280701 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 34280653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 4558089 - 4558139
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaatt 68  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||||    
T  4558089 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaatt 4558139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 3089806 - 3089854
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  3089806 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 3089854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 10887767 - 10887815
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  10887767 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 10887815  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 11581892 - 11581940
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  11581892 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 11581940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 14602129 - 14602081
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  14602129 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 14602081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 18365301 - 18365253
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  18365301 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 18365253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 22129744 - 22129792
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  22129744 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 22129792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 32737190 - 32737142
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  32737190 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 32737142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 37183135 - 37183183
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  37183135 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 37183183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 3514856 - 3514898
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatt 59  Q
    ||||||||||||||||||||||||||||||   ||||||||||    
T  3514856 tgttaaaatatacacccccctcccctcttattcaaaacatatt 3514898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 35899192 - 35899242
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaatt 68  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||||    
T  35899192 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaatt 35899242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 552540 - 552479
Alignment:
Q  5 cctcctcccttgtgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    ||||| |||||  |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  552540 cctccccccttaagttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 552479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 38911386 - 38911345
Alignment:
Q  85 aaagatgattgaattatattccccttcctcttatgttaaaat 126  Q
    ||||||| |||||||| | |||||||||||||||||||||||    
T  38911386 aaagatgtttgaattacactccccttcctcttatgttaaaat 38911345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 41078191 - 41078150
Alignment:
Q  5 cctcctcccttgtgttaaaatatacacccccctcccctctta 46  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||    
T  41078191 cctcctctcttatgttaaaatatacactcccctcccctctta 41078150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 5474677 - 5474725
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  5474677 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 5474725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 7940014 - 7939966
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  7940014 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 7939966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 11563672 - 11563720
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    |||||||||||||||  ||||||||||||||  |||||||||| |||||    
T  11563672 tgttaaaatatacacttccctcccctcttaatcaaaacatattagaaaa 11563720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 15006483 - 15006531
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  15006483 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 15006531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 17829104 - 17829152
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  17829104 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 17829152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 20894300 - 20894252
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  20894300 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 20894252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 33146723 - 33146675
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  33146723 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 33146675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 34173099 - 34173147
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  34173099 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 34173147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 37198977 - 37199025
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  37198977 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 37199025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 38972518 - 38972566
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  38972518 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 38972566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 781 - 829
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  781 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 3462 - 3510
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  3462 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 3510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 19666 - 19618
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  19666 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 19618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 8061067 - 8061127
Alignment:
Q  5 cctcctcccttgtgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||| ||| ||||||||||||||| ||||| ||||||||   |||||||||| |||||    
T  8061067 cctcctctcttatgttaaaatatacactccccttccctcttattcaaaacatattagaaaa 8061127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 29510499 - 29510451
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  29510499 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 29510451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 31766023 - 31765975
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||| ||||||||||||||   |||||||||| |||||    
T  31766023 tgttaaaatatacactcccctcccctcttattcaaaacatattagaaaa 31765975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 38011873 - 38011825
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  38011873 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 38011825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 41321567 - 41321615
Alignment:
Q  18 gttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaaa 66  Q
    |||||||||||||| ||||||||||||||   |||||||||| ||||||    
T  41321567 gttaaaatatacactcccctcccctcttattcaaaacatattagaaaaa 41321615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 43319969 - 43320017
Alignment:
Q  17 tgttaaaatatacacccccctcccctcttaagaaaaacatatttgaaaa 65  Q
    ||||||||||||||  |||||||||||||||  |||||||||| |||||    
T  43319969 tgttaaaatatacattcccctcccctcttaatcaaaacatattagaaaa 43320017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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