View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12228_low_6 (Length: 392)

Name: NF12228_low_6
Description: NF12228
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12228_low_6
NF12228_low_6
[»] chr5 (1 HSPs)
chr5 (1-377)||(20528564-20528940)
[»] chr8 (1 HSPs)
chr8 (7-365)||(40613060-40613418)
[»] chr7 (1 HSPs)
chr7 (5-354)||(3036216-3036565)
[»] chr4 (3 HSPs)
chr4 (5-365)||(16862952-16863312)
chr4 (216-307)||(8441273-8441364)
chr4 (33-98)||(11356809-11356874)
[»] chr3 (1 HSPs)
chr3 (7-365)||(20541904-20542262)
[»] chr6 (4 HSPs)
chr6 (223-365)||(17535413-17535555)
chr6 (266-366)||(28106749-28106849)
chr6 (240-311)||(29945332-29945403)
chr6 (30-122)||(29945122-29945214)
[»] chr2 (2 HSPs)
chr2 (240-344)||(10784464-10784568)
chr2 (30-122)||(10784254-10784346)
[»] chr1 (1 HSPs)
chr1 (79-307)||(23940153-23940380)
[»] scaffold0025 (1 HSPs)
scaffold0025 (243-309)||(61671-61737)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 20528940 - 20528564
Alignment:
Q  1 tcagtttcttggttttgagatttcatgtgttgttcttgaacaagtaaactactctgtaattcattaatggaaagtgttgtcacatcattggattcttcaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  20528940 tcagtttcttggttttgagatttcatgcgttgttcttgaacaagtaaactactatgtaattcattaatggaaagtgttgtcacatcattggattcttcaa 20528841  T
Q  101 tagatcacaccacataattgaacttgcttgttaaagatctcaagatcttttcaacaaccagagtttgatccatcttttcaccacgagttgttatcttgtt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20528840 tagatcacaccacataattgaacttgcttgttaaagatctcaagatcttttcaacaagcagagtttgatccatcttttcaccacgagttgttatcttgtt 20528741  T
Q  201 tgcaatagaaagtgttattgcaaagtattcatcaatggattcaccttctttcatagcaagaatctcaaattctttgcgtaatgcttgcaattgagcacgt 300  Q
    | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  20528740 tacaatagaaagtgttattgcaaagtattcatcaatggattcgccttctttcatagcaagaatctcaaattatttgtgtaatgcttgcaattgagcacgt 20528641  T
Q  301 ttcacctttgtaaaatcatgatacttcctacgcattgcatcccaaatatccttagctgaatctttgctcaagtttct 377  Q
    || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  20528640 ttgacctttgtagaatcatgatacttcctacgcattgcatcccaaatatccttagctgaatctttgatcaagtttct 20528564  T

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Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 7 - 365
Target Start/End: Original strand, 40613060 - 40613418
Alignment:
Q  7 tcttggttttgagatttcatgtgttgttcttgaacaagtaaactactctgtaattcattaatggaaagtgttgtcacatcattggattcttcaatagatc 106  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| || |||| ||| || ||||| || || || || ||||||||||| || |    
T  40613060 tcttgattttgagatttcatgtgttgttcttgaacaagtaaactactctgcaactcatcaattgatagtgtagtgacgtcgtttgattcttcaatggaac 40613159  T
Q  107 acaccacataattgaacttgcttgttaaagatctcaagatcttttcaacaaccagagtttgatccatcttttcaccacgagttgttatcttgtttgcaat 206  Q
    |||||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| | ||||| || || ||||||||    
T  40613160 acaccacataattgaatttacttgttaaagatctcaaaatcttttcaacaaccagcgtttgatccatcttctcaccatgtgttgtcattttatttgcaat 40613259  T
Q  207 agaaagtgttattgcaaagtattcatcaatggattcaccttctttcatagcaagaatctcaaattctttgcgtaatgcttgcaattgagcacgtttcacc 306  Q
    ||| || ||| |||| ||||| ||||| |||| |||||||||||||||  |||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  40613260 agagagagttcttgcgaagtaatcatctatggtttcaccttctttcatttcaagaatctcaaattccttgcgtaaagcttgcaattgagcacgtttcacc 40613359  T
Q  307 tttgtaaaatcatgatacttcctacgcattgcatcccaaatatccttagctgaatcttt 365  Q
    || ||| || | |||||||| || ||||| ||||||||||||||||| |||||||||||    
T  40613360 ttggtagaaccttgatactttctgcgcatggcatcccaaatatcctttgctgaatcttt 40613418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 5 - 354
Target Start/End: Complemental strand, 3036565 - 3036216
Alignment:
Q  5 tttcttggttttgagatttcatgtgttgttcttgaacaagtaaactactctgtaattcattaatggaaagtgttgtcacatcattggattcttcaataga 104  Q
    ||||||| || |||||||| ||| || |||||||||||||||| |||||||| | |||||  ||| | ||||  ||||||||||| ||||||||||||||    
T  3036565 tttcttgattctgagattttatgcgtcgttcttgaacaagtaagctactctgaagttcatcgatgaagagtgcagtcacatcattagattcttcaataga 3036466  T
Q  105 tcacaccacataattgaacttgcttgttaaagatctcaagatcttttcaacaaccagagtttgatccatcttttcaccacgagttgttatcttgtttgca 204  Q
     |||||||||||||||||||| ||||||||||||||||  ||||| ||||||||||| ||||||||||||||||||||| | | ||| ||||| || |||    
T  3036465 gcacaccacataattgaacttacttgttaaagatctcagaatcttctcaacaaccagtgtttgatccatcttttcaccatgtgatgtcatcttattagca 3036366  T
Q  205 atagaaagtgttattgcaaagtattcatcaatggattcaccttctttcatagcaagaatctcaaattctttgcgtaatgcttgcaattgagcacgtttca 304  Q
    |||||||| ||| |||| |||||||||||||| | ||||  ||| |||||||||||||||||||||||||||||||| || |||||||||| ||||||||    
T  3036365 atagaaagcgttcttgcgaagtattcatcaatagtttcattttccttcatagcaagaatctcaaattctttgcgtaaagcatgcaattgagaacgtttca 3036266  T
Q  305 cctttgtaaaatcatgatacttcctacgcattgcatcccaaatatcctta 354  Q
    | || |||||| | ||||| ||||||| ||||||||||||||||||||||    
T  3036265 cattggtaaaaccttgatatttcctacacattgcatcccaaatatcctta 3036216  T

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Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 5 - 365
Target Start/End: Complemental strand, 16863312 - 16862952
Alignment:
Q  5 tttcttggttttgagatttcatgtgttgttcttgaacaagtaaactactctgtaattcattaatggaaagtgttgtcacatcattggattcttcaataga 104  Q
    ||||||| ||||||| ||||||| |||||||||||||||||||||| || || | ||||||||| || ||||| || |||||||| ||||| | ||| ||    
T  16863312 tttcttgattttgagttttcatgcgttgttcttgaacaagtaaactgctatgaagttcattaattgagagtgtagttacatcatttgattcatgaattga 16863213  T
Q  105 tcacaccacataattgaacttgcttgttaaagatctcaagatcttttcaacaaccagagtttgatccatcttttcaccacgagttgttatcttgtttgca 204  Q
     |||| ||| ||||| || || ||||||||||||||||  |||||||||||||| || |||||||||||||| |||||| | ||||| ||||||||||||    
T  16863212 gcacagcacgtaattaaatttacttgttaaagatctcagaatcttttcaacaacaagtgtttgatccatcttctcaccatgtgttgtcatcttgtttgca 16863113  T
Q  205 atagaaagtgttattgcaaagtattcatcaatggattcaccttctttcatagcaagaatctcaaattctttgcgtaatgcttgcaattgagcacgtttca 304  Q
    |||||||| |||||||| ||||||| |||||| | ||||||||| ||||| |||||||||||||||||||| || || |||||||||||||||| |||||    
T  16863112 atagaaagagttattgcgaagtatttatcaatagtttcaccttccttcattgcaagaatctcaaattctttacgcaaagcttgcaattgagcacatttca 16863013  T
Q  305 cctttgtaaaatcatgatacttcctacgcattgcatcccaaatatccttagctgaatcttt 365  Q
    | || |   || | |||||||||||||||||||||||||||||||||||||||||||||||    
T  16863012 ctttggcggaaccttgatacttcctacgcattgcatcccaaatatccttagctgaatcttt 16862952  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 307
Target Start/End: Complemental strand, 8441364 - 8441273
Alignment:
Q  216 tattgcaaagtattcatcaatggattcaccttctttcatagcaagaatctcaaattctttgcgtaatgcttgcaattgagcacgtttcacct 307  Q
    ||||||||||||||||||||  | ||||| |||  |||| | |||||  ||||||||||||||||| ||| ||||||| |||||||| ||||    
T  8441364 tattgcaaagtattcatcaactgcttcacattccctcattgtaagaacttcaaattctttgcgtaaagctagcaattgtgcacgtttgacct 8441273  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 11356874 - 11356809
Alignment:
Q  33 ttcttgaacaagtaaactactctgtaattcattaatggaaagtgttgtcacatcattggattcttc 98  Q
    ||||||||||||||||||| | ||||| |||| |||||| |   |||| |||||||||||||||||    
T  11356874 ttcttgaacaagtaaactagtatgtaactcatcaatggataaaattgtaacatcattggattcttc 11356809  T

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Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 7 - 365
Target Start/End: Complemental strand, 20542262 - 20541904
Alignment:
Q  7 tcttggttttgagatttcatgtgttgttcttgaacaagtaaactactctgtaattcattaatggaaagtgttgtcacatcattggattcttcaatagatc 106  Q
    ||||| || |||||||||||| |||||||||||||||||||||||||||| || |||| ||| || || || || || ||||| ||||||||||| || |    
T  20542262 tcttgattctgagatttcatgcgttgttcttgaacaagtaaactactctgcaactcatcaattgatagcgtagtgacgtcatttgattcttcaatggaac 20542163  T
Q  107 acaccacataattgaacttgcttgttaaagatctcaagatcttttcaacaaccagagtttgatccatcttttcaccacgagttgttatcttgtttgcaat 206  Q
    |||||||||||||||| || ||||||||||||||||  ||||||||||||||||| |||||||||||||| |||||| | |   | || || ||||||||    
T  20542162 acaccacataattgaatttacttgttaaagatctcagaatcttttcaacaaccagcgtttgatccatcttctcaccatgtgcaatcattttatttgcaat 20542063  T
Q  207 agaaagtgttattgcaaagtattcatcaatggattcaccttctttcatagcaagaatctcaaattctttgcgtaatgcttgcaattgagcacgtttcacc 306  Q
    ||| || ||| |||  ||||| || || |||| ||||||||||||||| ||||||||||||||||| |||||||| | |||||||||||||| |||||||    
T  20542062 agagagagttcttgtgaagtaatcgtctatggtttcaccttctttcattgcaagaatctcaaattccttgcgtaaagattgcaattgagcacatttcacc 20541963  T
Q  307 tttgtaaaatcatgatacttcctacgcattgcatcccaaatatccttagctgaatcttt 365  Q
    || ||| || | |||||||| |||||||| ||||||||||||||||| | |||||||||    
T  20541962 ttcgtagaaccttgatactttctacgcatagcatcccaaatatcctttgttgaatcttt 20541904  T

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Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 223 - 365
Target Start/End: Complemental strand, 17535555 - 17535413
Alignment:
Q  223 aagtattcatcaatggattcaccttctttcatagcaagaatctcaaattctttgcgtaatgcttgcaattgagcacgtttcacctttgtaaaatcatgat 322  Q
    |||||||||||||||| |||||  || ||||| |||||||||| |||||| |||||||| ||||| |||| |||| ||||||| || ||| || | ||||    
T  17535555 aagtattcatcaatggtttcactctccttcattgcaagaatcttaaattccttgcgtaaagcttgtaattcagcatgtttcactttggtagaaccttgat 17535456  T
Q  323 acttcctacgcattgcatcccaaatatccttagctgaatcttt 365  Q
    |||| ||||||||||| |||||||||||||||| |||||||||    
T  17535455 actttctacgcattgcctcccaaatatccttagatgaatcttt 17535413  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 266 - 366
Target Start/End: Complemental strand, 28106849 - 28106749
Alignment:
Q  266 caaattctttgcgtaatgcttgcaattgagcacgtttcacctttgtaaaatcatgatacttcctacgcattgcatcccaaatatccttagctgaatcttt 365  Q
    ||||||||||| | ||||||||||| |||||||||||||| |||| | || | |||| |||||||||||| ||||||| |||||| || ||||||| |||    
T  28106849 caaattctttgtgcaatgcttgcaactgagcacgtttcacatttgcagaaccttgatgcttcctacgcatagcatcccgaatatcattggctgaattttt 28106750  T
Q  366 g 366  Q
    |    
T  28106749 g 28106749  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 29945332 - 29945403
Alignment:
Q  240 ttcaccttctttcatagcaagaatctcaaattctttgcgtaatgcttgcaattgagcacgtttcacctttgt 311  Q
    ||||||||||||||||||||||| |||||||||| | ||||| | || ||||||||||||||| ||||||||    
T  29945332 ttcaccttctttcatagcaagaacctcaaattctctacgtaaagttttcaattgagcacgttttacctttgt 29945403  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 29945122 - 29945214
Alignment:
Q  30 ttgttcttgaacaagtaaactactctgtaattcattaatggaaagtgttgtcacatcattggattcttcaatagatcacaccacataattgaa 122  Q
    |||||| |||||||| | |||||| || || |||| |||||| |||||||| |||||||| ||||||||||| || ||||| |||||||||||    
T  29945122 ttgttcatgaacaagaagactactttgcaactcatcaatggagagtgttgtaacatcatttgattcttcaattgagcacacaacataattgaa 29945214  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 344
Target Start/End: Original strand, 10784464 - 10784568
Alignment:
Q  240 ttcaccttctttcatagcaagaatctcaaattctttgcgtaatgcttgcaattgagcacgtttcacctttgtaaaatcatgatacttcctacgcattgca 339  Q
    |||||||||||||||||||||||||||||||||| | ||||| | |||||||||||||||||| ||||||||  || | ||||||||||| ||||| | |    
T  10784464 ttcaccttctttcatagcaagaatctcaaattctctacgtaaagtttgcaattgagcacgttttacctttgttgaaccttgatacttcctgcgcatggaa 10784563  T
Q  340 tccca 344  Q
    |||||    
T  10784564 tccca 10784568  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 30 - 122
Target Start/End: Original strand, 10784254 - 10784346
Alignment:
Q  30 ttgttcttgaacaagtaaactactctgtaattcattaatggaaagtgttgtcacatcattggattcttcaatagatcacaccacataattgaa 122  Q
    |||||| |||||||| | ||||||||| || |||| ||||||||||| ||| |||||||| ||||||||||| || || || |||||||||||    
T  10784254 ttgttcatgaacaagaagactactctgcaactcatcaatggaaagtgctgtaacatcatttgattcttcaattgagcaaacaacataattgaa 10784346  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 307
Target Start/End: Original strand, 23940153 - 23940380
Alignment:
Q  79 gtcacatcattggattcttcaatagatcacaccacataattgaacttgcttgttaaagatctcaagatcttttcaacaaccagagtttgatccatctttt 178  Q
    ||||||||||| ||||||||||| || ||||||||| ||||||||||||||| ||| ||||| || ||||| ||||| ||||   |||| |||||  |||    
T  23940153 gtcacatcatttgattcttcaatggaacacaccacacaattgaacttgcttg-taatgatcttaaaatcttctcaaccaccaagatttgttccattcttt 23940251  T
Q  179 caccacgagttgttatcttgtttgcaatagaaagtgttattgcaaagtattcatcaatggattcaccttctttcatagcaagaatctcaaattctttgcg 278  Q
    | ||| |||  || ||    ||| ||||||  |  ||| |||||||||||| || |||||||||||| ||  |||| ||||||  ||| ||||   ||||    
T  23940252 ccccatgagcagtgatacgattttcaatagccatagttcttgcaaagtatttattaatggattcaccctccctcattgcaagagcctcgaatttcgtgcg 23940351  T
Q  279 taatgcttgcaattgagcacgtttcacct 307  Q
     || ||||||||||||||||| |||||||    
T  23940352 caaagcttgcaattgagcacgcttcacct 23940380  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 309
Target Start/End: Original strand, 61671 - 61737
Alignment:
Q  243 accttctttcatagcaagaatctcaaattctttgcgtaatgcttgcaattgagcacgtttcaccttt 309  Q
    ||||| ||||||||||||||  ||||||| | ||||||| | ||||||||||||| |||| ||||||    
T  61671 accttttttcatagcaagaacttcaaattatctgcgtaaagtttgcaattgagcatgttttaccttt 61737  T

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